Locus 2680

Sequence ID 3R_DroMel_CAF1
Location 7,203,078 – 7,203,169
Length 91
Max. P 0.976850
window4348

overview

Window 8

Location 7,203,078 – 7,203,169
Length 91
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 71.21
Mean single sequence MFE -24.70
Consensus MFE -14.72
Energy contribution -16.52
Covariance contribution 1.80
Combinations/Pair 1.16
Mean z-score -1.96
Structure conservation index 0.60
SVM decision value 1.78
SVM RNA-class probability 0.976850
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7203078 91 - 27905053
CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUCCGGGGUCGGGUUAAGUACCUGGCCCCUUU-CCACCUUCCUUUCUACCACUACUACUACUU
........((((.(((((.....)))))((...((((((((((.....))))))))))...-))............))))............ ( -28.10)
>DroSec_CAF1 44149 91 - 1
CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUCCGGGGUCGGGUUAAGUAUCUGGCCCCUUU-CCACCUUCCUUUCUACCACUACUACUACUA
........((((.(((((.....)))))((...((((((((((.....))))))))))...-))............))))............ ( -25.50)
>DroEre_CAF1 49267 91 - 1
CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUCCGGGGUCGGGUUAAGUACCUGGCCCCUUU-CCACCUUCCUUUCUGCCACAACUACUACUU
........((((.(((((.....)))))((...((((((((((.....))))))))))...-))............))))............ ( -28.40)
>DroWil_CAF1 70089 77 - 1
CACUUGAUUGGUUUCGUUUUGUAAGCGAGG------------UUAAGCACCCCC---AGUGACUGGGAUUGGGACUGAAACUGGGAUUGGGA
..((..((((((((((((..(...((....------------....))...(((---((...)))))..)..))).))))))..)))..)). ( -21.50)
>DroYak_CAF1 49504 82 - 1
CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUCCGGGGUCGGGUUAAGUACCUGGCCCC----------CCCUUUCUACCACAACUACUACUU
........((((...(((.((..((.((((...((((((((((.....))))))))))----------.)))).))..)).))).))))... ( -27.90)
>DroAna_CAF1 43209 75 - 1
CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUACG-GGUCGGGUUAAGUACUUUGGCUUU-----GGCUUUCUUUGGCUCAG-----------
.....((((.((((((((.....))))))..)).-))))((((((((......(((...-----.)))...))))))))..----------- ( -16.80)
>consensus
CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUCCGGGGUCGGGUUAAGUACCUGGCCCCUUU_CCACCUUCCUUUCUACCACUACUACUACUU
.........(((((((((.....))))))).))((((((((((.....)))))))))).................................. (-14.72 = -16.52 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:02 2006