| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,184,035 – 7,184,125 |
| Length | 90 |
| Max. P | 0.970051 |
| Location | 7,184,035 – 7,184,125 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 74.70 |
| Mean single sequence MFE | -26.46 |
| Consensus MFE | -10.87 |
| Energy contribution | -11.37 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.41 |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.970051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7184035 90 + 27905053 U-GCGAAUGCAAAGUACAAUUUCUACAAG-GAAAACUUGUUUUGCAACUC-GCUG-A--CAAACCCUUUUGGGCUCAGGAUCCAC------CC------AU---CCGCCCU------- .-((((.((((((..(((((((((....)-))))..))))))))))..))-))..-.--...........((((...((((....------..------))---)))))).------- ( -23.40) >DroVir_CAF1 30135 91 + 1 U-GCGAAUGCAAAGUACAUUUUCUACAAG-UAAAACUUGUUUUGCAACAGGGCGGGG--CA-ACCCUUUAGGGCGCGCGCCCAAGC--C--CC-----------CGCCCCA------- .-(((..((((((...........(((((-.....)))))))))))...(((((((.--..-.)))....((((....))))..))--)--).-----------)))....------- ( -35.00) >DroPse_CAF1 60166 100 + 1 U-GCGAAUGCAAAGUACAAUUUCUACAAG-GAAAACUUGUUUUGCAACUC-GCGC-A--CA-ACCCUUUUGGGCGCUUGCCCCAGCCCCACCCCACCGCAC---CCC-CCU------- .-((((.((((((..(((((((((....)-))))..))))))))))..))-))..-.--..-.......((((.(((......)))))))...........---...-...------- ( -23.00) >DroWil_CAF1 50671 88 + 1 U-GCGAAUGCAAAGUACAUUUUCUACAAG-UAAAACUUGUUUUGCAACUC-GCAG-GGCCA-ACCCUUUUUGGCUCAGCCUCAGC------C------------UCACCCU------- (-((((.((((((...........(((((-.....)))))))))))..))-)))(-(((((-(......))))))).........------.------------.......------- ( -23.90) >DroAna_CAF1 23827 104 + 1 U-GCGAAUGCAAAGUACAAUUUCUACAAG-GAAAACUUGUUUUGCAACUC-GCAG-G--CA-ACCCUUUUGGGCGCAGCCUCCAGAAUCU-CC------AACUGCGGCCCUGCAACCC (-((((.((((((..(((((((((....)-))))..))))))))))..))-)))(-(--(.-.(((....)))(((((............-..------..))))))))......... ( -29.39) >DroPer_CAF1 61954 88 + 1 UGGCGAAUGCAAAGUACAAUUUCUACAAGGGAAAACUUGUUUUGCAACUC-GCGC-A--CA-ACCCUUUUGGGCGCUUGCCACAG--------------AC---CCC-CCU------- ((((((.((((((..(((((((((.....)))))..))))))))))....-((((-.--((-(.....))).))))))))))...--------------..---...-...------- ( -24.10) >consensus U_GCGAAUGCAAAGUACAAUUUCUACAAG_GAAAACUUGUUUUGCAACUC_GCGG_A__CA_ACCCUUUUGGGCGCAGGCCCCAG______CC______A____CCCCCCU_______ ..(((..((((((...........(((((......))))))))))).................(((....)))))).......................................... (-10.87 = -11.37 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:51 2006