Locus 2673

Sequence ID 3R_DroMel_CAF1
Location 7,179,849 – 7,179,941
Length 92
Max. P 0.512543
window4336

overview

Window 6

Location 7,179,849 – 7,179,941
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 98.70
Mean single sequence MFE -20.62
Consensus MFE -20.18
Energy contribution -20.58
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.15
Structure conservation index 0.98
SVM decision value -0.04
SVM RNA-class probability 0.512543
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7179849 92 - 27905053
CGAUAUGCACUUUGAAUGGAAAUGUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU
.......(((((.(((..(((((..(((((....)))))...)))))..))).)))))...(((.....((((.......))))...))).. ( -21.40)
>DroSec_CAF1 20718 92 - 1
CGAUAUGCACUUUGAAUGGAAAUGUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU
.......(((((.(((..(((((..(((((....)))))...)))))..))).)))))...(((.....((((.......))))...))).. ( -21.40)
>DroSim_CAF1 20697 92 - 1
CGAUAUGCACUUUGAAUGGAAAUGUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU
.......(((((.(((..(((((..(((((....)))))...)))))..))).)))))...(((.....((((.......))))...))).. ( -21.40)
>DroEre_CAF1 26033 92 - 1
CGAUAUGCACUUUGAAUGGAAAUAUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU
.......(((((.(((..(((((..(((((....)))))...)))))..))).)))))...(((.....((((.......))))...))).. ( -20.30)
>DroYak_CAF1 21178 92 - 1
CGAUAUGCACGCUGAAUGGAAAUGUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU
.......(((...(((..(((((..(((((....)))))...)))))..)))...)))...(((.....((((.......))))...))).. ( -18.60)
>consensus
CGAUAUGCACUUUGAAUGGAAAUGUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU
.......(((((.(((..(((((..(((((....)))))...)))))..))).)))))...(((.....((((.......))))...))).. (-20.18 = -20.58 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:51 2006