Locus 2672

Sequence ID 3R_DroMel_CAF1
Location 7,175,074 – 7,175,173
Length 99
Max. P 0.576118
window4335

overview

Window 5

Location 7,175,074 – 7,175,173
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 82.83
Mean single sequence MFE -30.61
Consensus MFE -21.64
Energy contribution -23.48
Covariance contribution 1.84
Combinations/Pair 1.19
Mean z-score -1.63
Structure conservation index 0.71
SVM decision value 0.08
SVM RNA-class probability 0.576118
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7175074 99 - 27905053
GACAUCUAUUGCACAUACAUGCUCCUGGGCGUGGCCAAGCCGCGCUCCUCGAACCGCAGUACGAAACCGGAGGCUAUACCAACAGUGGAUUUAACUACU
...((((((((.........((..(((((((((((...)))))))...(((.((....)).)))..))))..))........))))))))......... ( -30.33)
>DroVir_CAF1 18087 78 - 1
GACAUUUACUGCACCUACAUGCUGCUGGGCGUGGCCAAACCACGCGGCUCCCGCC---AGACCACGUCGGAGACA------------------ACCACU
(((.......(((.(.....).)))(((((((((.....))))))(((....)))---...))).)))(....).------------------...... ( -25.30)
>DroSec_CAF1 15987 99 - 1
GACAUCUACUGCACGUACAUGCUUCUGGGCGUUGCCAAGCCGCGCUCCUCGAACCGCAGUAUGAAACCGGAGGCUAUACCAACAGUGGAUUUAACCACU
...((((((((...(((...((((((((((((.((...)).))))...(((.((....)).)))..))))))))..)))...))))))))......... ( -30.80)
>DroSim_CAF1 15969 99 - 1
GACAUCUACUGCACAUACAUGCUUCUGGGCGUUGCCAAGCCGCGCUCCUCGAACCGCAGUACGAAACCGGAGGCUAUACCAACAGUGGAUUUAACCACU
...((((((((.........((((((((((((.((...)).))))...(((.((....)).)))..))))))))........))))))))......... ( -30.33)
>DroEre_CAF1 21221 99 - 1
GACAUCUACUGCACAUACAUGCUGCUGGGCGUGGCCAAGCCGCGCUCCUCGAGCCGCAGUACGAAACCGGAGGCUAUACCAACAGUGGAUUUAACUUCU
...((((((((..(.(((.(((.((((((((((((...)))))))))....))).)))))).).....((........))..))))))))......... ( -33.10)
>DroYak_CAF1 16295 99 - 1
GACAUCUACUGCACAUACAUGCUCCUGGGCGUGGCCAAGCCGCGCUCCUCGAGCCGCAGUGCGAAACCGGAGGCUAUACCAACAGUGGACUUGACUACU
....((((((((((......((((..(((((((((...))))))).))..))))....))))......(..((.....))..))))))).......... ( -33.80)
>consensus
GACAUCUACUGCACAUACAUGCUCCUGGGCGUGGCCAAGCCGCGCUCCUCGAACCGCAGUACGAAACCGGAGGCUAUACCAACAGUGGAUUUAACCACU
....(((((((.........(((.(((((((((((...)))))))...(((.((....)).)))..)))).)))........))))))).......... (-21.64 = -23.48 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:50 2006