Locus 2670

Sequence ID 3R_DroMel_CAF1
Location 7,172,490 – 7,172,610
Length 120
Max. P 0.819587
window4332

overview

Window 2

Location 7,172,490 – 7,172,610
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.92
Mean single sequence MFE -36.72
Consensus MFE -24.36
Energy contribution -25.04
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -2.02
Structure conservation index 0.66
SVM decision value 0.68
SVM RNA-class probability 0.819587
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7172490 120 - 27905053
AAGGAGUCGGUUCACCAGUGGAUGUGAAGACAACUCUACUGAGUGCCCAACGAAAGUUGGCUGUAAACCAAAAGCUGACAAGCGCAUCACACCAAAUUCGGAGUCCCAUUACUCAGUCGC
..(((.((((....))..(((.(((((.....((((....))))(((((((....))))).............(((....))))).))))))))......)).))).............. ( -34.50)
>DroSec_CAF1 13411 120 - 1
AAGGAGUCGGCGCUCCAGUGGAUGUGAAGACAACUCUACUGAGUGCCCAACGAAAGUUGGCUGUAAACCAAAAGCUGAACAGCGCAUCACACAAAAUUCGGAGUCCCGUUACGCAGUCGC
..(((.(((((((((.((((((.((.......)))))))))))))))((((....))))(((((..............))))).................)).))).............. ( -38.04)
>DroSim_CAF1 13381 120 - 1
AAGGAGUCGGCGCUCCAGUGGAUGUGAAGACAACUCUACUGAGUGCCCAACGAAAGUUGGCUGUAAACCAAAAGCUGAACAGCGCAUCACACCAAAUUCGGAGUCCCUUUACGCAGUCCC
..(((.(((((((((.((((((.((.......)))))))))))))))((((....))))(((((..............))))).................)).))).............. ( -38.04)
>DroEre_CAF1 18687 108 - 1
AAGU------------AGUGGAUGUGAAGCCAACUCUACUGAGUGCUCAACGAAAGUUGGUCGUCAACCAAAAGUUGGCCAGCACCGCACACCACAUUCGGAAUCCCGGUCCGCAGACCC
....------------.((((.((((......((((....))))(((((((....))))...((((((.....)))))).)))....))))))))....((....))((((....)))). ( -34.60)
>DroYak_CAF1 13718 113 - 1
AAGGAGUCGCUGCCUCAGUGGAUGUGAAGCCAACUCUACUGAGUGCCCAACGAAGGUUGGCUGUAAACCAAAAGCUGACCAGCACCACACAGCACAUUCGGAAUCCCGA-------AUCC
..(((((.((((((((((((((.((.......))))))))))).))........(((..(((..........)))..)))..........))))).(((((....))))-------)))) ( -38.40)
>consensus
AAGGAGUCGGCGCUCCAGUGGAUGUGAAGACAACUCUACUGAGUGCCCAACGAAAGUUGGCUGUAAACCAAAAGCUGACCAGCGCAUCACACCAAAUUCGGAGUCCCGUUACGCAGUCCC
..(((.((.......(((((((.((.......))))))))).(((.(((((....))))).............(((....)))....)))..........)).))).............. (-24.36 = -25.04 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:47 2006