Locus 2669

Sequence ID 3R_DroMel_CAF1
Location 7,169,276 – 7,169,372
Length 96
Max. P 0.813139
window4331

overview

Window 1

Location 7,169,276 – 7,169,372
Length 96
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 95.21
Mean single sequence MFE -18.22
Consensus MFE -13.80
Energy contribution -14.20
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.48
Structure conservation index 0.76
SVM decision value 0.65
SVM RNA-class probability 0.813139
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7169276 96 - 27905053
CUACCCCGACCACUU---UAGGAAACAAUCGUAGCCUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA
.....((((......---..(((.......(((((.......))))).....))).........(((..((((((.....))))))..)))...)))). ( -17.90)
>DroSec_CAF1 10193 96 - 1
CUACCCCGACCACUU---UAGGAAACAAUCGUAGCCUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA
.....((((......---..(((.......(((((.......))))).....))).........(((..((((((.....))))))..)))...)))). ( -17.90)
>DroSim_CAF1 10168 96 - 1
CUACCCCGACCACUU---UAGGAAACAAUCGUAGCCUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA
.....((((......---..(((.......(((((.......))))).....))).........(((..((((((.....))))))..)))...)))). ( -17.90)
>DroEre_CAF1 15475 97 - 1
CUACCCCGACCAC--UCGUACGAAACAAUCGUACCAUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA
.............--..((((((.....))))))..................((((((......(((..((((((.....))))))..)))..)))))) ( -18.70)
>DroYak_CAF1 10463 99 - 1
CUACCCCGACCACUCUCGUACGAAACAAUCGUACCAUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA
.................((((((.....))))))..................((((((......(((..((((((.....))))))..)))..)))))) ( -18.70)
>consensus
CUACCCCGACCACUU___UAGGAAACAAUCGUAGCCUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA
..............................(((((.......))))).....((((((......(((..((((((.....))))))..)))..)))))) (-13.80 = -14.20 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:45 2006