Locus 2667

Sequence ID 3R_DroMel_CAF1
Location 7,153,826 – 7,153,928
Length 102
Max. P 0.960903
window4328

overview

Window 8

Location 7,153,826 – 7,153,928
Length 102
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 95.87
Mean single sequence MFE -39.28
Consensus MFE -33.20
Energy contribution -33.70
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.52
Structure conservation index 0.85
SVM decision value 1.52
SVM RNA-class probability 0.960903
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7153826 102 + 27905053
-CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGGCGCUGCAGCU----GCGACGUAGCCGCGGAAU----UUUUUUGCG
-(((((((((.(((((.....((((...))))(((((.((.....)).((((.....)))).)))))))))).)))----))))))....((((((..----...)))))) ( -40.90)
>DroSec_CAF1 86763 102 + 1
-CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGGCGCUGCAGCU----GCGACGUAGCCGCGGAAU----UUUUUUGCG
-(((((((((.(((((.....((((...))))(((((.((.....)).((((.....)))).)))))))))).)))----))))))....((((((..----...)))))) ( -40.90)
>DroSim_CAF1 99950 102 + 1
-CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGGCGCUGCAGCU----GCGACGUAGCCGCGGAAU----UUUUUUGCG
-(((((((((.(((((.....((((...))))(((((.((.....)).((((.....)))).)))))))))).)))----))))))....((((((..----...)))))) ( -40.90)
>DroEre_CAF1 88355 102 + 1
-CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGGCGCUGCAGCU----GCGACGUAGCCGCGGAAU----UUUUUUGCG
-(((((((((.(((((.....((((...))))(((((.((.....)).((((.....)))).)))))))))).)))----))))))....((((((..----...)))))) ( -40.90)
>DroYak_CAF1 90326 102 + 1
-CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUUGCGCUGCAGCU----GCGACGUAGCCGCGGAAU----UUUUUUGCG
-(((((((((.(((((........((......))((((((.((..(........)..)).)))))).))))).)))----))))))....((((((..----...)))))) ( -37.10)
>DroAna_CAF1 95441 111 + 1
CCGUCGCAGUCGCAGCAAUUUUUUACGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGCCGCUGCCGCUGCCUGCGACGUAGCCGCGGAAUUCAUUUUUUUGCG
.((((((((..(((((..........((....))...........((....((.((((...))))))....)))))))))))))))....(((((((.......))))))) ( -35.00)
>consensus
_CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGGCGCUGCAGCU____GCGACGUAGCCGCGGAAU____UUUUUUGCG
.(((((((((.(((((.....((((...))))(((((.((.....)).((((.....)))).)))))))))).)))....))))))....(((((((.......))))))) (-33.20 = -33.70 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:43 2006