| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,150,213 – 7,150,313 |
| Length | 100 |
| Max. P | 0.974154 |
| Location | 7,150,213 – 7,150,313 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 73.97 |
| Mean single sequence MFE | -20.84 |
| Consensus MFE | -14.85 |
| Energy contribution | -15.52 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.974154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7150213 100 + 27905053 GCGACUGUCGCAGUUGCAUUGAAUUUUUGCCAUUGCAACGCGAUAGCUGACAGACGCCAACCGUCAGUCUCUCC-ACUCCCCCCAUUCAUCAGUACACA-------------CC ..(.(((((((.((((((.((.........)).)))))))))))))).(((.((((.....)))).))).....-........................-------------.. ( -25.90) >DroSec_CAF1 83187 88 + 1 GCGACUGUCGCAGUUGCAUUGAAUUUUUGCCAUUGCAAC--GAUAGCUGACAGACGCCAACCGUCAGUCCCCCC-ACACCCCC----------UACACU-------------CC (((.(((((((.((((((.((.........)).))))))--....)).))))).))).................-........----------......-------------.. ( -21.10) >DroSim_CAF1 95336 89 + 1 GCGACUGUCGCAGUUGCAUUGAAUUUUUGCCAUUGCAAC--GAUAGCUGACAGACGCCAACCGUCAGUGCCCCCAACACCCCC----------UACACA-------------CC (((.(((((((.((((((.((.........)).))))))--....)).))))).))).........(((.......)))....----------......-------------.. ( -21.60) >DroEre_CAF1 84810 85 + 1 GCGACUGUCGCAGUUGCAUUGAAUUUUUGCCAUUGCAAC--GAUAGCUGACAAACGCCAGUCGUCAGUGCCCA--CCAACU------------UACACA-------------CC (((..((((((.((((((.((.........)).))))))--....)).))))..)))..((.((.(((.....--...)))------------.)))).-------------.. ( -20.80) >DroYak_CAF1 86661 98 + 1 GCGACUGUCGCAGUUGCAUUGAAUUUUUGCCAUUGCAAC--GAUAGCUGACAGACGCCAGCCGUCAUCCCCCA--CCACCC------------CAAACCCCCCACCAACGCCCA (((...((.(((((.(((.........))).))))).))--((..((((........))))..))........--......------------...............)))... ( -21.40) >DroAna_CAF1 90586 92 + 1 UCAACUGUCGCAGUUGCAUUCAAUUUUUGCCAUUGCAAC--GCCGCCUGACAGACACCAGCCAUCGUAAC---C-ACUCUCCCAU--------UUCCCA----CCCAACU---- ....(((((((.((((((...............))))))--...))..))))).................---.-..........--------......----.......---- ( -14.26) >consensus GCGACUGUCGCAGUUGCAUUGAAUUUUUGCCAUUGCAAC__GAUAGCUGACAGACGCCAACCGUCAGUCCCCCC_ACACCCCC__________UACACA_____________CC (((.((((((((((.(((.........))).))))).....(....).))))).)))......................................................... (-14.85 = -15.52 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:39 2006