Locus 2663

Sequence ID 3R_DroMel_CAF1
Location 7,147,161 – 7,147,259
Length 98
Max. P 0.757452
window4323

overview

Window 3

Location 7,147,161 – 7,147,259
Length 98
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 85.93
Mean single sequence MFE -29.05
Consensus MFE -23.55
Energy contribution -23.88
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 0.81
SVM decision value 0.49
SVM RNA-class probability 0.757452
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7147161 98 + 27905053
GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU------GCUGCGGUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGC---CA----AAAAAAAAA----AAGAAAGGAUAA
(((.((.(((.(((.....(((((.....)))))------(((.(..(((((......)))))..)))))))))).)).))---).----.........----............ ( -29.30)
>DroSec_CAF1 80100 102 + 1
GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU------GCUGCGCUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGC---AA----AAAAAAAAAAAAACAGAAAGGAUAA
((((.((..(((((((...(((((.....)))))------..)).)))))..)).)))).((.....))(((......)))---..----......................... ( -29.20)
>DroSim_CAF1 91061 105 + 1
GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU------GCUGCGGUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGCCCAAA----AAAAAAAAAAAAACAGAAAGGAUAA
(((.((.(((.(((.....(((((.....)))))------(((.(..(((((......)))))..)))))))))).)).)))....----......................... ( -28.40)
>DroEre_CAF1 81733 93 + 1
GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU------GCUGCGGUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGC---CC----GAAAAAAA---------AGGGAUAA
(((.((.(((.(((.....(((((.....)))))------(((.(..(((((......)))))..)))))))))).)).))---).----........---------........ ( -28.40)
>DroYak_CAF1 83489 92 + 1
GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU------GCUGCGGUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGC---CC----GAAAAAAA---------A-GGAUAA
(((.((.(((.(((.....(((((.....)))))------(((.(..(((((......)))))..)))))))))).)).))---).----........---------.-...... ( -28.40)
>DroAna_CAF1 87186 103 + 1
GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUUGCUGUUGCUGCGGUGUUGCAACGUCAGCUGAAAGCGGCCCAAAUGGU---CCAGCAGAAAAAAA---------AAGAAAAG
((((.((..(((.((...(((((((((.....)))))))).)...)))))..)).)))).((((.....((((.....)))---))))).........---------........ ( -30.60)
>consensus
GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU______GCUGCGGUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGC___CA____AAAAAAAA_________AAGGAUAA
((.(((((.(((((.....(((((.....)))))......)))))..(((((......)))))....)))))))......................................... (-23.55 = -23.88 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:38 2006