Locus 2660

Sequence ID 3R_DroMel_CAF1
Location 7,144,993 – 7,145,093
Length 100
Max. P 0.590250
window4320

overview

Window 0

Location 7,144,993 – 7,145,093
Length 100
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 78.66
Mean single sequence MFE -21.00
Consensus MFE -8.47
Energy contribution -9.30
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -2.41
Structure conservation index 0.40
SVM decision value 0.11
SVM RNA-class probability 0.590250
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7144993 100 + 27905053
AUCUUAACGAUGACAAUGCGAAAGUUUUCGGGCACUA--C-CCCCA--CAAGAUCCCCC----GGAAACUAU----UCCCGCUUUUCAUACUUUUGCAUACUCCGCCAUUGUC
...........(((((((((..((((((((((.....--.-.....--........)))----)))))))..----....((.............))......)).))))))) ( -22.13)
>DroSec_CAF1 77973 100 + 1
AUCUUAACGAUGACAAUGCGAAAGUUUUCGGGCACUA--CACCCCA--CAAGAUCCCCC----GGAAACUAU----UCCCGCUUUUCAUACUUUU-CAUACUCCGCCAUUGUC
...........(((((((((..((((((((((.....--.......--........)))----)))))))..----....(.....)........-.......)).))))))) ( -18.35)
>DroSim_CAF1 88932 100 + 1
AUCUUAACGAUGACAAUGCGAAAGUUUUCGGGCACUA--CACCCCA--CAAGAUCCCCC----GGAAACUAU----UCCCGCUUUUCAUAGUUUU-CAUUCUCCGCCAUUGUC
...........(((((((((..((((((((((.....--.......--........)))----)))))))..----....(((......)))...-.......)).))))))) ( -21.35)
>DroEre_CAF1 79708 91 + 1
AUCUUAACGAUGACAAUGCGAAAGUUUUCGGGCACUA--CUCCCCA--CAAGAUCCCCC----GGAAACUAU----UCUCGGUAUUC----------AUAUACCGCCAUUGUC
...........(((((((((((((((((((((.....--((.....--..))....)))----))))))).)----))..(((((..----------..)))))).))))))) ( -26.20)
>DroYak_CAF1 81389 95 + 1
AUCUUAACGAUGACAAUGCAAAAGUUUUCGGGCACUA--CUUCCCU--CAAGAUCCCCC----GGAAACUAUGUAGUCUCGGUAUUC----------AUACACCGCCAUUGUC
...........((((((((...((((((((((.....--(((....--.)))....)))----)))))))..........(((....----------....)))).))))))) ( -23.00)
>DroAna_CAF1 85078 101 + 1
AUCUUAACGAUGACAAUGCGAAAGUUUUCAUCCUUCAUAUUCCCCAUCCCAGCUUCUCCUGUCGCUAACUAU----CGCUAGUGUCC----UU----CUGAGCCACCAUUGUC
........(((((....((....))..)))))...................((((.....(.(((((.....----...))))).).----..----..)))).......... ( -15.00)
>consensus
AUCUUAACGAUGACAAUGCGAAAGUUUUCGGGCACUA__CUCCCCA__CAAGAUCCCCC____GGAAACUAU____UCCCGCUUUUC____UU____AUACUCCGCCAUUGUC
...........(((((((((.........(((..........)))..................(....)..................................)).))))))) ( -8.47 =  -9.30 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:35 2006