Locus 2655

Sequence ID 3R_DroMel_CAF1
Location 7,139,173 – 7,139,270
Length 97
Max. P 0.621023
window4313

overview

Window 3

Location 7,139,173 – 7,139,270
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 97.25
Mean single sequence MFE -23.60
Consensus MFE -22.38
Energy contribution -22.77
Covariance contribution 0.39
Combinations/Pair 1.04
Mean z-score -0.85
Structure conservation index 0.95
SVM decision value 0.18
SVM RNA-class probability 0.621023
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7139173 97 + 27905053
UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUUGGCGCACAUAAUUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU
..........((((((((((.(((.((((...(((.....)))...)))).))).)).........((((.((.....))))))))))))))..... ( -25.20)
>DroSec_CAF1 72270 97 + 1
UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUUGGCGCACAUAAUUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU
..........((((((((((.(((.((((...(((.....)))...)))).))).)).........((((.((.....))))))))))))))..... ( -25.20)
>DroSim_CAF1 83224 97 + 1
UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUUGGCGCACAUAACUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU
..........((((((((((.((..((((...(((.....)))...))))..)).)).........((((.((.....))))))))))))))..... ( -23.10)
>DroEre_CAF1 73361 97 + 1
UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUGGGCGCACAUAAUUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU
..........((((((((((.(((.((((...(((.....)))...)))).))).)).........((((.((.....))))))))))))))..... ( -24.80)
>DroYak_CAF1 75352 97 + 1
UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUUGGCGCACAUAAUUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU
..........((((((((((.(((.((((...(((.....)))...)))).))).)).........((((.((.....))))))))))))))..... ( -25.20)
>DroAna_CAF1 79631 97 + 1
UUGUUUUAUGCGAUUAAUCCCCGGCUAUGGAAGCCACUUUGGCGCACAUAAUUGAGGUUACGUUCGGAUGCACAAAUUGCCAACAUUAAUUGAUUCC
((((..(((.(((.....((.(((.((((...(((.....)))...)))).))).))......))).))).))))...................... ( -18.10)
>consensus
UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUUGGCGCACAUAAUUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU
..........((((((((((.(((.((((...(((.....)))...)))).))).)).........((((.((.....))))))))))))))..... (-22.38 = -22.77 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:28 2006