Locus 2654

Sequence ID 3R_DroMel_CAF1
Location 7,138,851 – 7,138,956
Length 105
Max. P 0.999553
window4312

overview

Window 2

Location 7,138,851 – 7,138,956
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 93.82
Mean single sequence MFE -16.38
Consensus MFE -15.32
Energy contribution -15.32
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -2.18
Structure conservation index 0.94
SVM decision value 3.71
SVM RNA-class probability 0.999553
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7138851 105 - 27905053
AAAAAAAAAACUGCAUAAAAAGAAAAGGGAAAAUUGCAAACAAUUUGCCAAUGAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUUUGAAUGCGUUGAUCAAUAAA
........(((.((((...........((.((((((....)))))).))............(..((((((.........))))))..)))))))).......... ( -18.10)
>DroSec_CAF1 71948 100 - 1
AA-AAA----AUGUAUGAAAAGAAAAGGAAAAAUUGCAAACAAUUUGCCAAUAAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUAUGAAUGCAUUGAUCAAUAAA
..-..(----((((((..........((..((((((....)))))).))................(((((.........)))))....))))))).......... ( -13.70)
>DroSim_CAF1 82901 101 - 1
AAAAAA----AUGUAUGAAAAGAAAAGGAAAAAUUGCAAACAAUUUGCCAAUGAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUAUGAAUGCAUUGAUCAAUAAA
.....(----((((((..........((..((((((....)))))).))................(((((.........)))))....))))))).......... ( -13.70)
>DroEre_CAF1 73037 102 - 1
-AAAAA--AACUGCAUGAAAAGAAAAGGGAAAAUUGCAAACAAUUUGCCAAUGAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUUUGAAUGCAUUGAUCAAUAAA
-.....--...(((((...........((.((((((....)))))).))............(..((((((.........))))))..))))))............ ( -18.20)
>DroYak_CAF1 75016 103 - 1
AAAAAA--AACUGCAUGAAAAGAAAAGGGAAAAUUGCAAACAAUUUGCCAAUGAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUUUGAAUGCAUUGAUCAAUAAA
......--...(((((...........((.((((((....)))))).))............(..((((((.........))))))..))))))............ ( -18.20)
>consensus
AAAAAA__AACUGCAUGAAAAGAAAAGGGAAAAUUGCAAACAAUUUGCCAAUGAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUUUGAAUGCAUUGAUCAAUAAA
...........(((((..........((..((((((....)))))).))............(((((((((.........))))))))))))))............ (-15.32 = -15.32 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:27 2006