Locus 2653

Sequence ID 3R_DroMel_CAF1
Location 7,136,166 – 7,136,258
Length 92
Max. P 0.528225
window4311

overview

Window 1

Location 7,136,166 – 7,136,258
Length 92
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.55
Mean single sequence MFE -22.91
Consensus MFE -15.32
Energy contribution -14.88
Covariance contribution -0.44
Combinations/Pair 1.17
Mean z-score -1.04
Structure conservation index 0.67
SVM decision value -0.01
SVM RNA-class probability 0.528225
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7136166 92 - 27905053
--C--G----AACUCCGGCU--------------------CCAACUUGUGUGUGUUCAUUAUGUGAACAUGCAGCUUAUUUGAUUUCUGCAUGCAAACUAGUCGACUAAGGACAUUUGCU
--.--.----......(((.--------------------........(((((((((((...))))))))))).((((.((((((..((....))....)))))).)))).......))) ( -19.40)
>DroVir_CAF1 93548 91 - 1
GAC--G----GCCUCAGAGU--------------------CCAGU---UUUAUGUUCAUUAUGUGUACAUGGAGCUUAUUUGAUUUCUGCAUGUAAAUUAGUCGACUGAGGCCAUUUGUU
...--(----(((((((...--------------------..(((---(((((((.(((...))).))))))))))...((((((..(........)..))))))))))))))....... ( -28.70)
>DroSec_CAF1 68914 89 - 1
--C--G----AACUCCGGCU--------------------CCAACUUGUGUGUGUUCAUUAUGUGAACAUGCAGCUUAUUUGAUUUCUGCAUGCAAAUUAGUCG---AAGGACAUUUGCU
--.--(----((.((.(...--------------------.)......(((((((((((...)))))))))))........)).))).....((((((..(((.---...))))))))). ( -21.50)
>DroSim_CAF1 77239 92 - 1
--C--G----AACUCCGGCU--------------------CCAACUAGUGUGUGUUCAUUAUGUGAACAUGCAGCUUAUUUGAUUUCUGCAUGCAAAUUAGUCGACUAAGGACAUUUGCU
--(--(----((.(((....--------------------...((((((.(((((((((...))))))((((((............))))))))).)))))).......)))..)))).. ( -19.44)
>DroMoj_CAF1 85421 104 - 1
GGUCCGGGAGCUCGCUGAGC--------------UCGCUGCCAGU-U-UUUAUGUUCAUUAUGUGAACAUGGAGCUUAUUUGAUUUCUGCAUGUAAAUUACUCGACUGAGGCUAUUUGUU
(((((((((((((((((.((--------------.....))))))-.-..(((((((((...)))))))))))))))...(((((((.....).)))))).....))).))))....... ( -29.30)
>DroAna_CAF1 76633 112 - 1
--C--A----ACUUCUGGCUUCCAACUUCCCAACCAACUACCGACUUGUGUGUGUUCAUUAUGUGAACAUGCAGCUUAUUUGAUUUCUGCAUGCAAAUUAGUCGACUAAGGACAUUUGUU
--.--.----.....(((...))).........((......(((((....(((((((((...))))))((((((............)))))))))....))))).....))......... ( -19.10)
>consensus
__C__G____AACUCCGGCU____________________CCAACUUGUGUGUGUUCAUUAUGUGAACAUGCAGCUUAUUUGAUUUCUGCAUGCAAAUUAGUCGACUAAGGACAUUUGCU
................................................(((((((((((...))))))))))).((((.((((((..((....))....)))))).)))).......... (-15.32 = -14.88 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:26 2006