Locus 2650

Sequence ID 3R_DroMel_CAF1
Location 7,134,117 – 7,134,219
Length 102
Max. P 0.852776
window4308

overview

Window 8

Location 7,134,117 – 7,134,219
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.25
Mean single sequence MFE -22.27
Consensus MFE -13.02
Energy contribution -12.85
Covariance contribution -0.17
Combinations/Pair 1.14
Mean z-score -1.59
Structure conservation index 0.58
SVM decision value 0.80
SVM RNA-class probability 0.852776
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7134117 102 + 27905053
--------ACUCCCUUAUCCUGCUGCCCG----------AUUUCACGUAUUUCGGCGAAAUUAUUUUAUAAUGAAUGUUCGUAUUUAGCUAAAGUUUUAUGAAUGGCUUUCAUUAUGGAC
--------....................(----------(((((.((.....))..))))))..(((((((((((.(((((((...(((....))).)))))))....))))))))))). ( -18.90)
>DroVir_CAF1 91079 100 + 1
--------------C---CCCGUUGCGC---UCGCACCUAUCGUUCUUUUUAGGGCGAAAUUAUUUUAUAAUGAAUGUUCGUAUUUAGCUAAAGUUUUAUGAAUGGCGUUCAUUAUGGGC
--------------.---(((.......---((((.((((..........)))))))).........((((((((((((((((...(((....))).)))))...)))))))))))))). ( -28.10)
>DroGri_CAF1 80566 108 + 1
---------CCCCCU---CCCGCUGCGCACCUUGCACUAUUCGUUCUUUGCGGAGCGAAAUUAUUUUAUAAUGAAUGUUCGUAUUUAGCUAAAGUUUUAUGAAUGGCGUUCAUUAUGGGC
---------..(((.---..((((.((((....((.......))....)))).))))..........((((((((((((((((...(((....))).)))))...)))))))))))))). ( -31.50)
>DroEre_CAF1 68539 100 + 1
----------UCCCAAAUCCUGGUGCCCG----------AUUUCACGUAUUUCGGCGAAAUUAUUUUAUAAUGAAUGUUCGUAUUUAGCUAAAGUUUUAUGAAUGGCUUUCAUUAUGCAC
----------............((((..(----------(((((.((.....))..)))))).....((((((((.(((((((...(((....))).)))))))....)))))))))))) ( -20.20)
>DroWil_CAF1 71621 106 + 1
UGUGUAUGCCUCCCUCUUUCUGUAAC--------------UUUUACAUUUUUCGGCGAAAUUAUUUUAUAAUGAAUGUUCGUAUUUAGCUAAAGUUUUAUGAAUGGCUUUCAUUAUAAAA
......((((..........((((..--------------...))))......))))......((((((((((((.(((((((...(((....))).)))))))....)))))))))))) ( -18.19)
>DroAna_CAF1 74656 86 + 1
------------------------CCCUG----------AUUUUACGUUUUUCGCCGAAAUUAUUUUAUAAUGAAUGUUCGUAUUUAGCCAAAGUUUUAUGAAUGGCUUUCAUUACGGGA
------------------------(((((----------(((((.((.....))..))))))).....(((((((.(((((((...(((....))).)))))))....))))))).))). ( -16.70)
>consensus
__________UCCCU___CCUGCUGCCCG__________AUUUUACGUUUUUCGGCGAAAUUAUUUUAUAAUGAAUGUUCGUAUUUAGCUAAAGUUUUAUGAAUGGCUUUCAUUAUGGAC
................................................................(((((((((((.(((((((...(((....))).)))))))....))))))))))). (-13.02 = -12.85 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:23 2006