Locus 2647

Sequence ID 3R_DroMel_CAF1
Location 7,130,359 – 7,130,457
Length 98
Max. P 0.973155
window4304

overview

Window 4

Location 7,130,359 – 7,130,457
Length 98
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 87.94
Mean single sequence MFE -24.50
Consensus MFE -18.30
Energy contribution -18.58
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -2.76
Structure conservation index 0.75
SVM decision value 1.71
SVM RNA-class probability 0.973155
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7130359 98 - 27905053
GAUUGUUUUUCGAUUCUAGUCGGAAGAUAAAG---AAAGGACUGUGAAAUGAAAUUAGAUG-GGGACAUGAAGUGCAUUGAUCUGAUAGGAUUAGACUUUCA-
..((((((((((((....)))))))))))).(---((((........((((...((..(((-....))).))...))))(((((....)))))...))))).- ( -24.30)
>DroSec_CAF1 63215 102 - 1
GAUUGUUUUUCGAUUUUAGUCGAAGGAUAAAAAAAAAAGAACUGCGAAAUGAAAUUAGAUG-GGGACAUGAAGUCCAUUGAGCUGUUAGGAUUAGAAAUUUAU
..((((((((((((....)))))))))))).........(((.((..((((...((..(((-....))).))...))))..)).)))................ ( -21.60)
>DroSim_CAF1 70843 99 - 1
GAUUGUUUUUCGAUUCUAGUCGGAGGAUAAAG---AAAGGACUGCGAAAUGAAAUUAGAUG-GGGACAUGAAGUCCAUUGAGCUGUUAGGAUUAGAUAUUUAU
..((((((((((((....))))))))))))..---....(((.((..((((...((..(((-....))).))...))))..)).)))................ ( -21.50)
>DroEre_CAF1 64770 98 - 1
GAUUGUUUUUCGAUUCUAGUCGGAGGAUAAAG---AAAGGACUGUGUAACGAAAUUAGAUG-GGGACAAAAAGUCCAUUGAUCUGAAAGGAUUAGACUCUCA-
..((((((((((((....))))))))))))((---(..(((((.(((..(.(.......).-)..)))...))))).(((((((....)))))))..)))..- ( -27.40)
>DroYak_CAF1 66597 99 - 1
GAUUGUUUUUCGAUUCUAGUCGGAGGAUAAAG---AAAGGACUGUGAAAUGAAAUUAGAAGGGGGACUAAAAGUCCAUUGAUCUGAAAGGAUUAGACUUUCA-
..((((((((((((....)))))))))))).(---((((........................((((.....)))).(((((((....))))))).))))).- ( -27.70)
>consensus
GAUUGUUUUUCGAUUCUAGUCGGAGGAUAAAG___AAAGGACUGUGAAAUGAAAUUAGAUG_GGGACAUGAAGUCCAUUGAUCUGAUAGGAUUAGACUUUCA_
..((((((((((((....)))))))))))).................................((((.....)))).(((((((....)))))))........ (-18.30 = -18.58 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:19 2006