Locus 2645

Sequence ID 3R_DroMel_CAF1
Location 7,128,269 – 7,128,359
Length 90
Max. P 0.627687
window4297

overview

Window 7

Location 7,128,269 – 7,128,359
Length 90
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 91.92
Mean single sequence MFE -21.61
Consensus MFE -16.78
Energy contribution -16.74
Covariance contribution -0.04
Combinations/Pair 1.17
Mean z-score -1.59
Structure conservation index 0.78
SVM decision value 0.19
SVM RNA-class probability 0.627687
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7128269 90 + 27905053
ACACGCAUCC----UGGCAAGUGAAAAAGGAGGCAUAAGCCGUUUAAAUUAUAUCCCAGCGUCUGUGUGUUUCCACACAUACAUAUGCUAAUAC
....((((.(----(((...((((.......(((....))).......))))...)))).((.((((((....)))))).))..))))...... ( -21.24)
>DroSec_CAF1 61210 90 + 1
ACACGCAUCC----UGGCAAGUGAAAAAGGAGGCAUAAGCCGUUUAAAUUAUAUCCCAGCGUCUGUGUGUUGCCACACACACAUAUGCUAAUAC
.......(((----(............))))(((....)))................(((((.(((((((......))))))).)))))..... ( -22.30)
>DroSim_CAF1 68764 90 + 1
ACACGCAUCC----UGGCAAGUGAAAAAGGAGGCAUAAGCCGUUUAAAUUAUAUCCCAGCGUCUGUGUGUUGCCACACACACAUAUGCUAAUAC
.......(((----(............))))(((....)))................(((((.(((((((......))))))).)))))..... ( -22.30)
>DroEre_CAF1 62632 94 + 1
ACACGCAUCCUGCCUGGCAAGUGAAAAAGGAGGCAUAAGCCGUUUAAAUUUUAUUCCUGCGUAUGUGUGCUUCUACACAUACAUAAGCUAAUAC
....(((((((.(((....)).)....))))(((....)))................)))(((((((((....)))))))))............ ( -22.40)
>DroYak_CAF1 64413 90 + 1
ACACGCAUCC----UGGCAAGUGAAAAAGGAGCCAUAAGCUGUUUAAAUUAUAUCCCUGCGUCUGUGUGCUUCUGCACAUACAUAUGCUAAUAC
..........----(((((.(((...(((.(((.....))).)))..................(((((((....)))))))))).))))).... ( -19.80)
>consensus
ACACGCAUCC____UGGCAAGUGAAAAAGGAGGCAUAAGCCGUUUAAAUUAUAUCCCAGCGUCUGUGUGUUUCCACACAUACAUAUGCUAAUAC
..............(((((.(((........(((....)))......................(((((((....)))))))))).))))).... (-16.78 = -16.74 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:13 2006