Locus 2644

Sequence ID 3R_DroMel_CAF1
Location 7,127,013 – 7,127,110
Length 97
Max. P 0.890900
window4296

overview

Window 6

Location 7,127,013 – 7,127,110
Length 97
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 82.23
Mean single sequence MFE -35.06
Consensus MFE -18.22
Energy contribution -18.98
Covariance contribution 0.76
Combinations/Pair 1.08
Mean z-score -2.67
Structure conservation index 0.52
SVM decision value 0.96
SVM RNA-class probability 0.890900
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7127013 97 - 27905053
AUUUCGAUGCUGC------------UCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUGCGC--UGC--GUCUGCGUCCAUUGUCCUCCGGAUU-UUCGGGGGGAAU
....(((((.(((------------....((((((((..(((((((((.....)))))))))...).).--)))--))).)))..)))))((((((.(...-..).)))))).. ( -35.10)
>DroSec_CAF1 59966 96 - 1
AUUUCGAUGCUGC------------UCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUGCGC--UGC--GUCUGCGUCCAUUGUCCUCCGGAUU-UUCGGG-GGAAU
....(((((.(((------------....((((((((..(((((((((.....)))))))))...).).--)))--))).)))..)))))((((((((...-.)))))-))).. ( -35.80)
>DroSim_CAF1 67501 108 - 1
AUUUCGAUGCUGCUCCUGAUGCUGCUCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUGCGC--UGC--GUCUGCGUCCAUUGUCCUCCAGAUU-UUCGGG-GGUAU
....(((((.(((....(((((.((.......(((....(((((((((.....)))))))))..)))))--.))--))).)))..))))).(((((.....-...)))-))... ( -32.71)
>DroYak_CAF1 63097 108 - 1
AUUUCGAUGCUGCUGCUGAUGCCGCUCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUCCGC--UGC--GUCUGCGUCCAUUGUCCUCCGGAGU-UUUGGG-CGAAU
.....(((((.((.((....)).))....((((((.(..(((((((((.....))))))))).....).--)))--))).)))))..((((((........-...)))-))).. ( -33.70)
>DroAna_CAF1 67807 108 - 1
AUUCUG-----GCUGCUGAUGCUGCUCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUGUGCCCUGCGAGUCUGCGUCCAUUGUCCUGUGAAAAGUGCAGG-GGCUG
.....(-----(((...(((((.(((((....((((...(((((((((.....)))))))))...))))...).))))..)))))......(((((.......)))))-)))). ( -38.00)
>consensus
AUUUCGAUGCUGCU_CUGAUGC_GCUCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUGCGC__UGC__GUCUGCGUCCAUUGUCCUCCGGAUU_UUCGGG_GGAAU
.............................((((((....(((((((((.....))))))))).....((...)).....)))))).....(((((((((...)))))).))).. (-18.22 = -18.98 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:12 2006