| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,121,743 – 7,121,841 |
| Length | 98 |
| Max. P | 0.876720 |
| Location | 7,121,743 – 7,121,841 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 85.16 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -15.06 |
| Energy contribution | -14.73 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.91 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.876720 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7121743 98 + 27905053 AAAAGUUCGAAGUGCAAAACUUGGGAAUUAUAAUGUGGAGCUGAAGUGGAUUCUUCUAGAAAAGUUAAGAAUUAGUUCAGUAGUCUACAAGCACUUUG .......((((((((....(....)........((((((((((((.((.((((((((.....))..)))))))).))))))..)))))).)))))))) ( -25.20) >DroSec_CAF1 54847 87 + 1 AAAAGUUCGAAGUGCAAAGCUUGAGAAUUGUAAUAUGGAGCUGAAGUGGAUUCUUCUAGAAAAGUGAA-----------GUAGUCUAUAAGUACUUCG .......((((((((..(((((.(...........).)))))...(((((((((((.........)))-----------).)))))))..)))))))) ( -24.20) >DroSim_CAF1 62285 87 + 1 AAAAGUUCGAAGUGCAAAGCUUGAGAAUUGUAAUGUGGAGCAGAAGUGGAUUCUUCUAGAAAAGUUAA-----------GUAGUAUACAAGUACUUCG .......((((((((...((((.(.(.......).).))))(((((......)))))...........-----------...........)))))))) ( -18.90) >consensus AAAAGUUCGAAGUGCAAAGCUUGAGAAUUGUAAUGUGGAGCUGAAGUGGAUUCUUCUAGAAAAGUUAA___________GUAGUCUACAAGUACUUCG .......((((((((...((((.(.(.......).).)))).((((......))))..................................)))))))) (-15.06 = -14.73 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:09 2006