Locus 264

Sequence ID 3R_DroMel_CAF1
Location 1,040,544 – 1,040,664
Length 120
Max. P 0.654187
window458

overview

Window 8

Location 1,040,544 – 1,040,664
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.44
Mean single sequence MFE -25.70
Consensus MFE -21.91
Energy contribution -21.70
Covariance contribution -0.21
Combinations/Pair 1.17
Mean z-score -1.56
Structure conservation index 0.85
SVM decision value 0.25
SVM RNA-class probability 0.654187
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1040544 120 - 27905053
AUAGCCACAGUUGACGGCCUGUUAAACGAUAAGUUGGUCAAAACGAUUGCUUAGCAAUAGCUUAUAGGUAUUGCACCUUCGGCUCGCUAAAAGAAAAAUGUUGAUCUAUCCUAAAUUAAA
.((((...((((((.((............(((((.((((.....)))))))))((((((.(.....).)))))).)).)))))).))))............................... ( -22.70)
>DroSec_CAF1 12186 107 - 1
AUAGCCACAGUUGAAGGCCUGCUAAACGAUAAGUUGGUCAAAACGAUUGGUUAGCAAUAGUUUAUAGCUAUUGCAACUUCAACUCGCU-----------CUUGUUC--CCCUAAAUGACA
..(((...(((((((((((.(((........))).))))..........(((.((((((((.....)))))))))))))))))).)))-----------.......--............ ( -26.90)
>DroSim_CAF1 12203 107 - 1
AUAGCCACAGUUUACGGCCUGCUAAACGAUAAGUUGGUCAAAACGAUUGGUUAGCAAUAGCUUAUAGCUAUUGCAACUUCAACUCGCU-----------CUUGUUC--CCCUAAAUGAAA
.((((((..((((..((((.(((........))).)))).))))...))))))((((((((.....))))))))..............-----------.......--............ ( -27.50)
>consensus
AUAGCCACAGUUGACGGCCUGCUAAACGAUAAGUUGGUCAAAACGAUUGGUUAGCAAUAGCUUAUAGCUAUUGCAACUUCAACUCGCU___________CUUGUUC__CCCUAAAUGAAA
..(((...((((((.((((..((........))..))))..............((((((((.....))))))))....)))))).)))................................ (-21.91 = -21.70 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:59 2006