Locus 2639

Sequence ID 3R_DroMel_CAF1
Location 7,120,193 – 7,120,298
Length 105
Max. P 0.976783
window4291

overview

Window 1

Location 7,120,193 – 7,120,298
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 70.51
Mean single sequence MFE -21.02
Consensus MFE -15.90
Energy contribution -15.94
Covariance contribution 0.04
Combinations/Pair 1.43
Mean z-score -1.40
Structure conservation index 0.76
SVM decision value 1.78
SVM RNA-class probability 0.976783
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7120193 105 + 27905053
UCGAAGCUUCUGUGUUCUCUGGAUUUUGGCAUAUUGCUAGAAUUUUACUACACAAUUGUUUCCUCAAAUCACAAAUCUGUGUCGGGGUCCUAAAACGACGUCUAC
..(((((...(((((.....((((((((((.....))))))))))....)))))...))))).......((((....))))..((.(((.......))).))... ( -25.20)
>DroSec_CAF1 53320 104 + 1
UCGAAGCUUCUGUGU-CUCUGGAUUUCAGCAUAUUGCUAGAAUUUAACUACACAAUUGUUUCCUCAAAUCACUAAUCUGUGUCGAAGUCCAAAAACGACGUCUAC
..(((((...(((((-...((((((..(((.....)))..))))))...)))))...))))).......(((......)))..((.(((.......))).))... ( -21.20)
>DroSim_CAF1 60745 104 + 1
UCGAAGCUUCUGUGU-CUAUGGAUUUUAGCAUAUUGCUAGAAUUUUACUGCACAAUUGUUUCCUCAAAUCACAAAUCUGGGUCGAAGUCCAAAAACGACGUCUAC
..(((((...(((((-....((((((((((.....))))))))))....)))))...)))))..................((((...........))))...... ( -23.30)
>DroEre_CAF1 54756 81 + 1
UUGAAAGUAGUCUGC-CCCAAGAUUUUUGCAUAUUGCUAGAACUUUAUUACAGAAUUUGUUCCUCAAAUCAGAAAUGAGUG---A--------------------
((((.((((((.(((-............))).)))))).((((...(((....)))..)))).)))).(((....)))...---.-------------------- ( -12.00)
>DroYak_CAF1 56186 84 + 1
UUGAGGGUCCUCUGU-GCCGAGAUUUUGGCAUAUUGCUAGGAUUUUACUACAGAAUUGUUCCAUCAAACCACAAAGGAGUG---AA-----------------AU
((((.((..((((((-(..(((((((((((.....)))))))))))..))))))...)..)).))))..(((......)))---..-----------------.. ( -23.40)
>consensus
UCGAAGCUUCUGUGU_CUCUGGAUUUUAGCAUAUUGCUAGAAUUUUACUACACAAUUGUUUCCUCAAAUCACAAAUCUGUGUCGAAGUCC_AAAACGACGUCUAC
..(((((...(((((....(((((((((((.....)))))))))))...)))))...)))))........................................... (-15.90 = -15.94 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:07 2006