Locus 2638

Sequence ID 3R_DroMel_CAF1
Location 7,119,698 – 7,119,800
Length 102
Max. P 0.500000
window4290

overview

Window 0

Location 7,119,698 – 7,119,800
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.51
Mean single sequence MFE -28.53
Consensus MFE -17.06
Energy contribution -19.20
Covariance contribution 2.14
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.60
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7119698 102 - 27905053
UUGGGCCAUCAUCUAUCGUCACAGCAUCCGUUGUUCGAUGGUCCUUAUUCGGAGGAGGCCGUGGCCAGAACCAGUGCGAACCUACCAGAAUGGAACAGCCCC
..((((......((((((..(((((....))))).))))))(((..(((((((((.(((....))).(........)...))).)).)))))))...)))). ( -31.40)
>DroSec_CAF1 52833 81 - 1
UUGGGCCAUCAUCUAUCGUCACAGCAUCCGUUGUUCGAUGGUCCUUUUUCGGAGGA---------------------GAACCUACCAGAAUGGAACAGCCCC
..((((......((((((..(((((....))))).))))))(((.((((.(((((.---------------------...))).)))))).)))...)))). ( -26.70)
>DroSim_CAF1 60257 81 - 1
UUGGGCCAUCAUCUAUCGUCACAGCAUCCGUUGUUCGAUGGUCCUUUUUCGGAGGA---------------------GAACCUACCAGAAUGGAACAGCCCC
..((((......((((((..(((((....))))).))))))(((.((((.(((((.---------------------...))).)))))).)))...)))). ( -26.70)
>DroEre_CAF1 54252 102 - 1
UUGGGCCAUCAUCUAUCGUCACAGCAUCCGUUGUUCGAUGGUCCUUUUUCGGAGGAGGCCGUGGCCAGAACCAAAGCGAACCUACCAGAAUGGAACAGCCCC
..((((......((((((..(((((....))))).))))))(((.((((.(((((..((..(((......)))..))...))).)))))).)))...)))). ( -32.70)
>DroYak_CAF1 55661 102 - 1
UUUGGCCAUCAUCCAUCGCCACAGCAUCCGUUGUUCGAUGCUCCUUUUUCGGAGGAGGCCGUGGCCAGAACCAAAGCGAACCUACCACUAUGGAACAGCCCC
(((((((((....(((((..(((((....))))).)))))((((((.....))))))...))))))))).(((.((.(.......).)).)))......... ( -33.20)
>DroAna_CAF1 60536 78 - 1
CUGGG--ACCAUCUAUCGUCACAGCAUCCGUUGCUCAAUAGUCCUUUUUGGGAA----------------------CGAACCUACCGGCAUGGAACGGCCCU
..(((--.((.(((((.(((..((((.....))))......((((....)))).----------------------..........))))))))..))))). ( -20.50)
>consensus
UUGGGCCAUCAUCUAUCGUCACAGCAUCCGUUGUUCGAUGGUCCUUUUUCGGAGGA____________________CGAACCUACCAGAAUGGAACAGCCCC
..((((......((((((..(((((....))))).))))))(((...((.(((((..((..(((......)))..))...))).)).))..)))...)))). (-17.06 = -19.20 +   2.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:06 2006