| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,118,797 – 7,118,898 |
| Length | 101 |
| Max. P | 0.719755 |
| Location | 7,118,797 – 7,118,898 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.15 |
| Mean single sequence MFE | -27.34 |
| Consensus MFE | -9.49 |
| Energy contribution | -10.97 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.719755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7118797 101 + 27905053 UUCCAGGCUUUGAAAUUGCAAAAUGCAG----AAAU-U-UUUGCCAUCCUAUUUUCAGAUGGCG--UUGGCU--AA--AAAAUUUGCAUUUUUGCCCAAGCGAGC----UGGCCCAA ..((((.(((.(.....(((((((((((----(..(-(-((.((((.((((((....))))).)--.)))).--))--))..)))))).)))))).....)))))----)))..... ( -28.80) >DroPse_CAF1 19021 90 + 1 UUCCAGGCUUUGAAAUUGCAAAAUGCAGCACAAAAUGU-UUUGCCAUC--------GGAU--------GGCUAGAA--AAAAUUUGCAUUUUUGC---AGCGA-C----AGAGGGAG .(((...(((((...(((((((((((((.........(-((.(((((.--------..))--------))).))).--.....))))).))))))---))...-)----))))))). ( -22.56) >DroGri_CAF1 63230 96 + 1 UUUCAGGCUUUGAAACUGCA--UUGCAC----AAAU-U--UUGCUAUUCUCGUUUUU-GAUGCG--AUGGCU--AAAAAAAAUUUGCAUUUUCGCCACAGCAAAC-------GCCAA .....(((...((((.((((--......----....-.--..((((...((((....-...)))--))))).--..........)))).))))((....))....-------))).. ( -18.85) >DroSim_CAF1 59382 101 + 1 UUCCAGGCUUUGAAAUUGCAAAAUGCAG----AAAU-U-UUUGCCAUCCUAUUUUCAGAUGGCG--UUGGCU--AA--AAAAUUUGCAUUUUUGCCCAAGCGAGC----UGGGCCAA .....((((..(...(((((((((((((----(..(-(-((.((((.((((((....))))).)--.)))).--))--))..)))))))))).......)))).)----..)))).. ( -30.21) >DroWil_CAF1 55396 102 + 1 UUUCAGGCUUUGAAAUUGCAAAAUGCAG----CAAU-UUUUUGCCCUCCUAUUUUCUGAUGGCUCUCUGGCU--AA--AAAAUUUGCAUUUUUGCAAGAGCGAGC------GGCCAA .....(((((((...((((((((((((.----.(((-((((((((...(((((....)))))......))).--))--)))))))))).))))))))...)))..------)))).. ( -29.70) >DroAna_CAF1 59655 105 + 1 UUUCAGGCUUUGAAAUUGCAAAAUGCAG----AAAU-U-UUUGGCAUCCUAUUUUCAGAUGGCG--AUGGCU--AA--AAAAUUUGCAUUUUUGCCCAAACGGGCUGGCUGGCCCAA .....((((........(((((((((((----(..(-(-((((((((((((((....))))).)--)).)))--))--))).)))))))))).((((....))))..)).))))... ( -33.90) >consensus UUCCAGGCUUUGAAAUUGCAAAAUGCAG____AAAU_U_UUUGCCAUCCUAUUUUCAGAUGGCG__AUGGCU__AA__AAAAUUUGCAUUUUUGCCCAAGCGAGC____UGGGCCAA .....(((((((.....(((((((((((..............((((.....................))))............))))))))).)).....)))........)))).. ( -9.49 = -10.97 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:05 2006