| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,116,829 – 7,116,935 |
| Length | 106 |
| Max. P | 0.712770 |
| Location | 7,116,829 – 7,116,935 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 51.37 |
| Mean single sequence MFE | -29.87 |
| Consensus MFE | -11.54 |
| Energy contribution | -11.10 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712770 |
| Prediction | RNA |
| WARNING | Mean pairwise identity too low. |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7116829 106 + 27905053 AAGGACGUGCACUUCCUUUGUGCACUUGCAUUGGUCUGCGUGUGCCUUCCCAACUGCAACAGUAUGUGUGUUUUUCUGAGUG----UGCGUUUACGUAUAUG--UCUGUGGC ..((((((((((.......))))))(((((((((...((....))....)))).)))))(((.............))).(((----((((....))))))))--)))..... ( -28.52) >DroWil_CAF1 53493 97 + 1 AAGGACGUGCACUUC-UUUGUGCAUAGACUUAUGUAUGCGAGUGUAUGUCU--CUGCC------------UUGGCAUGAGUACGCGUGUGUCUGUAUAUCUGUCUCUGUGGU .(((((((((((...-...))))))(((..(((..(((((.(((((...((--((((.------------...))).)))))))).)))))..)))..)))))).))..... ( -29.60) >DroAna_CAF1 56966 82 + 1 AAGGACCUGCACUUCCUUUGUGCACUUGCACUGGUCUGUGUGUGCGUA----UGUUCAUCGGUGGAAGUGGCA----GAGUG----AGUGUGUG------------------ ........(((((..((((((.(((((.(((((((..(..((....))----..)..))))))).))))))))----)))..----)))))...------------------ ( -31.50) >consensus AAGGACGUGCACUUCCUUUGUGCACUUGCAUUGGUCUGCGUGUGCAUA_C___CUGCA_C_GU____GUGUUA___UGAGUG____UGUGUCUG__UAU_UG__UCUGUGG_ ..((((((((((.......))))))..((((........))))..............................................))))................... (-11.54 = -11.10 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:04 2006