Locus 2634

Sequence ID 3R_DroMel_CAF1
Location 7,111,663 – 7,111,757
Length 94
Max. P 0.858606
window4286

overview

Window 6

Location 7,111,663 – 7,111,757
Length 94
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 71.85
Mean single sequence MFE -24.41
Consensus MFE -15.71
Energy contribution -16.10
Covariance contribution 0.39
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.64
SVM decision value 0.82
SVM RNA-class probability 0.858606
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7111663 94 + 27905053
UGUAACAAAUCAUGGCCACUGCCUUGGCCUAAAGGCAUGCCAAGCACAGCGUCUCCAUUCUGAUU--UGUACACAGAGAGAAAAUUCACUU-AG---UUA----------------
.(((.(((((((((((...((((((......)))))).)))).((...))..........)))))--)))))((.(((.((....)).)))-.)---)..---------------- ( -23.20)
>DroSec_CAF1 44673 111 + 1
UGUAACAAAUCAUGGCCUCUGCCUUGGCCUAAAGGCAUGCCAAGCACAGCGUCUCCGUUCUGAUU--CGUACACAGAACGAAAAUUCACCUCAG---UUAUAUUGCCGGUAGAGUU
............((((...((((((......)))))).)))).............(((((((...--......)))))))..((((((((.(((---(...))))..))).))))) ( -26.60)
>DroSim_CAF1 50726 111 + 1
UGUAACAAAUCAUGGCCUCUGCCUUGGCCUAAAGGCAUGCCAAGCACAGCGUCUCCAUUCUGAUU--CGUACACAGAACGAAAAUUCACCUCAG---UUAUAUUGCUGGUAAAGUU
...(((......((((...((((((......)))))).)))).((.(((((........((((((--(((.......)))))........))))---......)))))))...))) ( -25.64)
>DroEre_CAF1 45926 97 + 1
UGUAACAAAUCAUGGCCUCUGCCUUGGCCUAAAGGCAUGCCAAGCACAGCGUCUCCAUUCUGAUU--UUUACACUGACCAGAAAAAAAGCACUG---UUAUG--------------
.((((((.....((((...((((((......)))))).))))......((.......(((((.((--........)).))))).....))..))---)))).-------------- ( -22.80)
>DroYak_CAF1 47120 85 + 1
UGUAACAAAUCAUGGCCUCUGCCUUGGCCCAAGGGCAUGCCAAGCACAGCGUCUCCAUUCUGAUU--UGUACACUGAUCAAAAAAGA-----------------------------
((((.(((((((.((((........))))...(((.((((........)))).)))....)))))--))))))..............----------------------------- ( -22.90)
>DroAna_CAF1 51639 114 + 1
UGUAACAAAUCAUGGCAGCUGCCUUGGCCAAAAGGUAUGCCAUGGCAUGAAUCUC-AGUCUCAUCGCUUUACACAGGAAAAGUA-UCAUUCUAGAGUUUAAAAUCUUGACAAACUU
(((((.....(((((((..((((((......)))))))))))))((((((.....-....)))).)).)))))(((((......-((......))........)))))........ ( -25.34)
>consensus
UGUAACAAAUCAUGGCCUCUGCCUUGGCCUAAAGGCAUGCCAAGCACAGCGUCUCCAUUCUGAUU__UGUACACAGAACAAAAAUUCACCUCAG___UUAUA______________
((((...(((((((((...((((((......)))))).)))).((...))..........)))))....))))........................................... (-15.71 = -16.10 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:02 2006