Locus 263

Sequence ID 3R_DroMel_CAF1
Location 1,032,807 – 1,032,903
Length 96
Max. P 0.835324
window457

overview

Window 7

Location 1,032,807 – 1,032,903
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 83.62
Mean single sequence MFE -18.69
Consensus MFE -15.31
Energy contribution -14.76
Covariance contribution -0.55
Combinations/Pair 1.16
Mean z-score -1.98
Structure conservation index 0.82
SVM decision value 0.73
SVM RNA-class probability 0.835324
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1032807 96 + 27905053
AAGUAUAAAAAUUAAUGCACUCUAGGGCAGCUUGGUAGCUUAUAAAGAAAUAAGUUUUAAAAUCGACAGUAAGUUUAGAAAAGGUUGUGGCGCCCA
..((((........))))......((((.((((((((((((((......))))))).....)))))((.(((.(((....))).))))))))))). ( -16.40)
>DroSec_CAF1 4162 95 + 1
AUGUAUAAAAAUUAAUGCAUUCUAGGGCA-UUUAAUAGCUUAUAAAGAAAUAAGUAUUAAGACCAACAGGAAGAUUAGAAAAAACUGUGGCGCCCA
((((((........))))))....((((.-(((((((.(((((......)))))))))))).(((.(((...............)))))).)))). ( -21.56)
>DroSim_CAF1 4184 86 + 1
AUGUAUAAAAAUUAAUGCAUUCUAGGGCA-UUUGGUAGCUUAUAAAGAAAUAAGUAUUAAGAUCGACAGGA---------AAAGUUGUGGCGCCCA
((((((........))))))....((((.-(((((((.(((((......))))))))))))..(.((((..---------....)))).).)))). ( -18.10)
>consensus
AUGUAUAAAAAUUAAUGCAUUCUAGGGCA_UUUGGUAGCUUAUAAAGAAAUAAGUAUUAAGAUCGACAGGAAG_UUAGAAAAAGUUGUGGCGCCCA
..((((........))))......((((...(((((.((((((......)))))))))))..((.((((...............)))))).)))). (-15.31 = -14.76 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:58 2006