Locus 2627

Sequence ID 3R_DroMel_CAF1
Location 7,095,806 – 7,095,899
Length 93
Max. P 0.994939
window4276

overview

Window 6

Location 7,095,806 – 7,095,899
Length 93
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 96.79
Mean single sequence MFE -25.12
Consensus MFE -23.86
Energy contribution -23.70
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.82
Structure conservation index 0.95
SVM decision value 2.53
SVM RNA-class probability 0.994939
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7095806 93 + 27905053
GGCAUUCCUCUUCUUCAUCGUCCUUGUCGUCCUUU-UUUCACUUGGCUGCUGCCACUUACUAUGCAGUCCAAUAAGAUGAGGCCAAGGCAAGGA
....................((((((((..((((.-..((..((((((((.............)))).))))...)).))))....)))))))) ( -24.72)
>DroSec_CAF1 28887 93 + 1
GGCAUUCCUCUUCUUCAUCGUCCUUGUCGUCCUUU-UUUCACUUGGCUGCUGCCACUUACUCUGCAGUCCAAUAAGACGAGGCCAAGGCAAGGA
....................((((((((..((((.-(((...((((((((.............)))).))))..))).))))....)))))))) ( -24.52)
>DroSim_CAF1 31664 93 + 1
GGCAUUCCUCUUCUUCAUCGUCCUUGUCGUCCUUU-UUUCACUUGGCUGCUGCCACUUACUCUGCAGUCCAAUAAGACGAGGCCAAGGCAAGGA
....................((((((((..((((.-(((...((((((((.............)))).))))..))).))))....)))))))) ( -24.52)
>DroEre_CAF1 29667 93 + 1
GGCAUUCCACUUCUACAUCGUCCUUGUCGUCCUUU-UUUCACUUGGCUGCUGCCACUUACUCCGCAGUCCAAUAAGAUGAGGCCAAGGCAAGGA
....................((((((((..((((.-..((..((((((((.............)))).))))...)).))))....)))))))) ( -24.12)
>DroYak_CAF1 30904 94 + 1
GGCAUUCCUCUUCUUCAUCGUCCUUGCCGUCCUUUUUUUCACUUGGCUGCUGCCACUUACUCUGCAGUCCAAUAAGACGAGGCCAAGGCAAGGA
....................((((((((..((((.((((...((((((((.............)))).)))).)))).))))....)))))))) ( -27.72)
>consensus
GGCAUUCCUCUUCUUCAUCGUCCUUGUCGUCCUUU_UUUCACUUGGCUGCUGCCACUUACUCUGCAGUCCAAUAAGACGAGGCCAAGGCAAGGA
....................((((((((..((((....((..((((((((.............)))).))))...)).))))....)))))))) (-23.86 = -23.70 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:53 2006