Locus 2625

Sequence ID 3R_DroMel_CAF1
Location 7,093,249 – 7,093,348
Length 99
Max. P 0.929683
window4272

overview

Window 2

Location 7,093,249 – 7,093,348
Length 99
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.98
Mean single sequence MFE -32.35
Consensus MFE -22.19
Energy contribution -24.17
Covariance contribution 1.97
Combinations/Pair 1.10
Mean z-score -1.87
Structure conservation index 0.69
SVM decision value 1.20
SVM RNA-class probability 0.929683
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7093249 99 + 27905053
ACGCCUUCCUGCGGAAGGACGAAC---------AGGACGAGGAGGUCGCGCGGCGGGACAGCCAUAAAUAUUAAAUAUGAUACUUUAUGCACUGGACCUGCUGCUCGA
.(.((((((((((......))..)---------))))..))).).(((.((((((((.(((.(((((((((((....))))).))))))..)))..)))))))).))) ( -35.60)
>DroSec_CAF1 26338 99 + 1
ACGCCUUCCUGCGGAAGGACGAAC---------AGGACGAGGAGGUCGCGCGGCGGGACAGCCAUAAAUUUUAAAUAUGAUACUUUAUGCACUGGACCUGCUGCUCGA
.(.((((((((((......))..)---------))))..))).).(((.((((((((.(((.((((((..(((....)))...))))))..)))..)))))))).))) ( -32.90)
>DroSim_CAF1 29117 99 + 1
ACGCCUUCCUGCGGAAGGACGAAC---------AGGACGAGGAGGUCGCGCGGCGGGACAGCCAUAAAUAUUAAAUAUGAUACUUUAUGCACUGGACCUGCUGCUCGA
.(.((((((((((......))..)---------))))..))).).(((.((((((((.(((.(((((((((((....))))).))))))..)))..)))))))).))) ( -35.60)
>DroEre_CAF1 27062 90 + 1
ACGGCUUCCUGCGGAAGGACGAAC------------------AGGACGCGCGGCGGGACAGCCAUAAAUAUUAAAUAUGAUACUUUAUGCACUGAACCUGCUUCUCGG
.((((.(((((((......))..)------------------)))).))(.((((((.(((.(((((((((((....))))).))))))..)))..)))))).).)). ( -26.80)
>DroYak_CAF1 27966 108 + 1
ACGCCUUCCUGCGGAAGGACGAACUGGGCGAACAGGACGAGGAGGUCGCGCGGCGGGACAGCCAUAAAUAUUAAAUAUGAUACUUUAUGCACUGGUCCUGCUGCUCGA
....((((((.(....)..((..(((......)))..))))))))(((.((((((((((((.(((((((((((....))))).))))))..)).)))))))))).))) ( -41.60)
>DroMoj_CAF1 32471 79 + 1
-CA--UC--AGCAGCAGCCCAU--------------------ACUUUGCGCAUUUGCGUCGCCAUAAAUAUUAAAUAUGAUACUUUAUGUAGUGGAGCUUGGGC----
-..--..--.......(((((.--------------------.(((..(((....)).....(((((((((((....))))).))))))..)..)))..)))))---- ( -21.60)
>consensus
ACGCCUUCCUGCGGAAGGACGAAC_________AGGACGAGGAGGUCGCGCGGCGGGACAGCCAUAAAUAUUAAAUAUGAUACUUUAUGCACUGGACCUGCUGCUCGA
.(((((((.....))))).)).........................((.((((((((.(((.(((((((((((....))))).))))))..)))..)))))))).)). (-22.19 = -24.17 +   1.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:49 2006