Locus 2622

Sequence ID 3R_DroMel_CAF1
Location 7,088,003 – 7,088,123
Length 120
Max. P 0.945409
window4267

overview

Window 7

Location 7,088,003 – 7,088,123
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.67
Mean single sequence MFE -31.14
Consensus MFE -22.05
Energy contribution -21.50
Covariance contribution -0.55
Combinations/Pair 1.48
Mean z-score -2.09
Structure conservation index 0.71
SVM decision value 1.35
SVM RNA-class probability 0.945409
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7088003 120 - 27905053
CCAAGAAGUUUUAGCCAAGCUUCGGUGGCAGAAGUGGCAGAAGUGGCCGGAGUGGGAGAAACGGGGUAAAUGGGCCAGGAAAUGGCAAAGGAUGAAAGUCGCAUCUAGCAUGGCUUUUAA
((.....(((((..((..((((((((.((.............)).)))))))).)).)))))...........((((.....))))...)).((((((((((.....))..)))))))). ( -33.82)
>DroSec_CAF1 21142 111 - 1
CCAAGAAGUUUUAGCCAAGCUUCGGUGGCAGAA---------GUGGCCGAAGUGGGAGAAACGGGGUAAAUGGGCCAGGAAAUGGCAAAGGAUGAAAGUCGCAUCUAGCAUGGCUUCUAA
...(((((((((..((..((((((((.((....---------)).)))))))).))..)))((.(.((.(((.((((.....))))....(((....))).))).)).).)))))))).. ( -35.40)
>DroSim_CAF1 23930 111 - 1
CCAAGAAGUUUUAGCAAAGCUUCGGUGGCAGAA---------GUGGCCGAAGUGGGAGAAACGGGGUAAAUGGGCCAGGAAAUGGCAAAGGAUGAAAGUCGCAUCUAGCAUGGCUUCUAA
...(((((((...((...((((((((.((....---------)).))))))))..........((((......((((.....))))....(((....)))..)))).))..))))))).. ( -35.00)
>DroEre_CAF1 21712 100 - 1
CCAAGAAGUUUUAGCCAAGCUUCGGUGGCAGAA---------GUGGUCGAAGUGGGAGA---------AAUGGGCCAGGAAAUGGCAAAGGAUUUCAUC--CUUCUAGCAUGGCUUCUAA
(((.(((((((.....)))))))..))).((((---------((.(((..((.((((((---------(((..((((.....)))).....))))).))--)).)).).)).)))))).. ( -31.00)
>DroYak_CAF1 22645 102 - 1
CCAAGAAGUUUUAGCCAAGCUUCGGUGGCAGAA---------GUGGUAGAAAUGGGAGA---------AAUGGGCCAGGAAAUGGCAAAGGAUGAAAGUCGCAUCUAGCAUGGCUUCUAA
...(((((((...(((..((....)))))....---------(((.((((.........---------.....((((.....))))....(((....)))...)))).)))))))))).. ( -28.70)
>DroAna_CAF1 22444 98 - 1
CCAAGAAGUUUUAGCCAAGCAAUGGCCAGAGAA---------AUGGUCAAAAGGGGG-------------CGGCCUGAAAAAUGGGAAAUGGGACGAGUUGCACUUAGUAUGGCUUCUAA
......((....(((((.((..((((((.....---------.)))))).(((...(-------------((((.((....((.....))....)).))))).))).)).))))).)).. ( -22.90)
>consensus
CCAAGAAGUUUUAGCCAAGCUUCGGUGGCAGAA_________GUGGCCGAAGUGGGAGA_________AAUGGGCCAGGAAAUGGCAAAGGAUGAAAGUCGCAUCUAGCAUGGCUUCUAA
...(((((((...((...((((((((.((.............)).)))))))).(((................((((.....))))....(((....)))...))).))..))))))).. (-22.05 = -21.50 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:44 2006