Locus 262

Sequence ID 3R_DroMel_CAF1
Location 1,027,639 – 1,027,755
Length 116
Max. P 0.726441
window456

overview

Window 6

Location 1,027,639 – 1,027,755
Length 116
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 80.23
Mean single sequence MFE -22.52
Consensus MFE -14.64
Energy contribution -14.70
Covariance contribution 0.06
Combinations/Pair 1.21
Mean z-score -1.84
Structure conservation index 0.65
SVM decision value 0.41
SVM RNA-class probability 0.726441
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1027639 116 - 27905053
AAAGGAGUAUAGUUUUGUAGUCCAAUUUGGGUUAUCAAAUGUUU--UACUUGAAGAUCUUUGUAAUCUUCUGAUUGAAUCAACUGUGUUAUAAUGUAUUCUUAUGGCUCUUCUUUUUU
(((((((.((((((...(((((......((((((.((((.((((--(.....))))).))))))))))...)))))....))))))(((((((.......))))))).)))))))... ( -20.90)
>DroSec_CAF1 72453 111 - 1
GAAGGAGUAUAGUUUUAUAGUCCAGUUUGAAUUAUCAAAUGUUU--UUUCUGAAGAUUUUUGUAAUCUUUUGAUUGAAUCAA-----CUAUAAUGUGCUCUUAUAUCCCUUCUUUUUU
(((((..((((((.(((((((...((((((....))))))((((--..((.(((((((.....))))))).))..))))..)-----))))))...)))...)))..)))))...... ( -25.50)
>DroSim_CAF1 76213 114 - 1
GAAGGAGUAUAGUUUUAUAGUCCAGUUUGAAUUAUCAAAUGUUUU-UUUCUGAAGAUUUUUGUAAUCUUUUGAUUGAAUCAACA---CUAUAAUGUGCUCUUAUAUCUCUUGUUUUAU
..(((((((((...(((((((...((((((....))))))(.(((-..((.(((((((.....))))))).))..))).)...)---)))))))))))))))................ ( -23.80)
>DroEre_CAF1 75893 107 - 1
GACGGAGAAUAGUUUUAUACCCCAAUUUGGGUUAUCAAAUGUUUUUUUUCUGAAGAUCUUUGUAAUCUU-UGAUUGAGUCAA-----CUAGCAUGUGUUCUCUUAUAGUUUAU-----
...((((((((...........(((((.((((((.((((.((((((.....)))))).)))))))))).-.))))).((...-----...))...))))))))..........----- ( -19.90)
>consensus
GAAGGAGUAUAGUUUUAUAGUCCAAUUUGAAUUAUCAAAUGUUU__UUUCUGAAGAUCUUUGUAAUCUUUUGAUUGAAUCAA_____CUAUAAUGUGCUCUUAUAUCUCUUCUUUUUU
..(((((((((((((.(((((((.....))))))).))))..............(((.....(((((....))))).))).............)))))))))................ (-14.64 = -14.70 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:57 2006