Locus 2616

Sequence ID 3R_DroMel_CAF1
Location 7,073,312 – 7,073,407
Length 95
Max. P 0.710643
window4258

overview

Window 8

Location 7,073,312 – 7,073,407
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 96.49
Mean single sequence MFE -18.23
Consensus MFE -18.00
Energy contribution -18.67
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.99
SVM decision value 0.37
SVM RNA-class probability 0.710643
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7073312 95 + 27905053
UCCUCACUUAAUAAUAGCACAGUUAAGUAAAAGACAGUUUGUAUUGUUUUGUUAUUAGAGCAAAUUGGCUUGUACAAUUUUAUUGAUUUUUGUUU
.......(((((((((((...)))).(((.(((.((((((((.(((.........))).)))))))).))).)))....)))))))......... ( -13.10)
>DroSec_CAF1 6229 95 + 1
CUCUUACUUAAUAAUAGCAAAGUUAAGUAAAAGACAGGUUGUAUUGUUUUGUUAUUAGAGCAAAUUGGCUUGUACAAUUUUAUUGAUUUUUGUUU
...............(((((((...(((((((.((((((((..((((((((....))))))))..))))))))....)))))))...))))))). ( -20.80)
>DroSim_CAF1 8845 95 + 1
CUCUUACUUAAUAAUAGCAAAGUUAAGUAAAAGACAGGUUGUAUUGUUUUGUUAUUAGAGCAAAUUGGCUUGUACAAUUUUAUUGAUUUUUGUUU
...............(((((((...(((((((.((((((((..((((((((....))))))))..))))))))....)))))))...))))))). ( -20.80)
>consensus
CUCUUACUUAAUAAUAGCAAAGUUAAGUAAAAGACAGGUUGUAUUGUUUUGUUAUUAGAGCAAAUUGGCUUGUACAAUUUUAUUGAUUUUUGUUU
...............(((((((...(((((((.((((((((..((((((((....))))))))..))))))))....)))))))...))))))). (-18.00 = -18.67 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:35 2006