Locus 2615

Sequence ID 3R_DroMel_CAF1
Location 7,070,981 – 7,071,074
Length 93
Max. P 0.962184
window4257

overview

Window 7

Location 7,070,981 – 7,071,074
Length 93
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 74.82
Mean single sequence MFE -39.43
Consensus MFE -24.17
Energy contribution -25.48
Covariance contribution 1.31
Combinations/Pair 1.28
Mean z-score -1.98
Structure conservation index 0.61
SVM decision value 1.54
SVM RNA-class probability 0.962184
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7070981 93 + 27905053
AAGCCCGGCCAGGCUCUGUUCAAGAUCAAGCCCGGUGCAGCGCCCGCCAAGGCAGCUGCUCCAGCGGCUGCU---CCUGCGCCUGCUGCCCCAAAA
..(((.(((..((.(((.....)))))..))).)))((((((..(((...(((((((((....)))))))))---...)))..))))))....... ( -41.60)
>DroPse_CAF1 7873 96 + 1
AAGCCUGGCCAGGAGCUGUUCAAGAUGAAGCCGGGUGCGGCUCCUGCUAAGGCGGCGGGUGCAGCCGCACCAGCUCCCGCUCCAGCUGCCCCCAAG
.(((.(((.(.((((((.(((.....)))....(((((((((((((((.....))))))...))))))))))))))).)..))))))......... ( -43.50)
>DroGri_CAF1 4655 84 + 1
AAGCCCGGCCAAGAGCUCUUCAAAAUGAAGCCUGGCGCCGCUCCAGCCAAGUCAGCUAGUGCGCCGGCC------------GCAGAAGCGCCUAAG
..((..((((.((.((((........).)))))(((((.(((..(((.......)))))))))))))))------------((....))))..... ( -27.40)
>DroSec_CAF1 3880 93 + 1
AAGCCCGGCCAGGCUCUGUUCAAGAUUAAGCCUGGUGCAGCGCCCGCCAAGGCAGCUGCUCCAGCGGCUGCU---CCUGCGCCUGCUGCCCCAAAA
.......((((((((..(((...)))..))))))))((((((..(((...(((((((((....)))))))))---...)))..))))))....... ( -45.20)
>DroSim_CAF1 6430 93 + 1
AAGCCCGGCCAGGCUCUGUUCAAGAUUAAGCCCGGUGCAGCGCCCGCCAAGGCAGCUGCUCCAGCGGCUGCU---CCUGCGCCUGCUGCCCCAAAA
.......(((.((((..(((...)))..)))).)))((((((..(((...(((((((((....)))))))))---...)))..))))))....... ( -40.60)
>DroAna_CAF1 3314 91 + 1
AAGCCCGGCCAGGAACUUUUUAAGAUGAAGCCUGGUGCGGCGCCGGCCGGAGCACCAGCUCCAGCAGCUGCUGCCCCAGCGCCCGCUGCCC-----
..(((((((((((..((((.......)))))))))).))).)).(((.(((((....)))))(((.((.((((...))))))..)))))).----- ( -38.30)
>consensus
AAGCCCGGCCAGGAUCUGUUCAAGAUGAAGCCUGGUGCAGCGCCCGCCAAGGCAGCUGCUCCAGCGGCUGCU___CCUGCGCCUGCUGCCCCAAAA
..(((.(((......((.....)).....))).)))((((((...((...(((((((((....)))))))))......))...))))))....... (-24.17 = -25.48 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:34 2006