| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,065,090 – 7,065,200 |
| Length | 110 |
| Max. P | 0.945856 |
| Location | 7,065,090 – 7,065,200 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.07 |
| Mean single sequence MFE | -24.72 |
| Consensus MFE | -19.66 |
| Energy contribution | -19.26 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.945856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7065090 110 + 27905053 UACAUCUGUCGCUACAACUGUGGCAAAACCUUUCGCUUUUGCAGCGCCCGCAGCAUGCAUGAAAGGUAGAAUUUCAGACGAAUCUCCACCGUCACUUA----GCCCACCAUCCC ....(((...(((((....)))))...(((((((((...(((.((....)).))).))..))))))))))......((((.........)))).....----............ ( -26.90) >DroSec_CAF1 8305 102 + 1 UACAUCUGUCGCUACAACUGCGGCAAAACCUUUCGCUUUUGCAGCGCCCGCAGCAUGCAUGAAAGGUAGAAUUUCAGACGAAUCUCUACCGUCACUUA----ACCA-------- ....((((((((.......)))))...(((((((((...(((.((....)).))).))..))))))))))......((((.........)))).....----....-------- ( -27.60) >DroSim_CAF1 8525 108 + 1 UACAUCUGUCGCUACAACUGCGGCAAAACCUUUCGCUUUUGCAGCGCCCGCAGCAUGCAUGAAAGGUAGAAUUUCAGACGAAUCACCACCGUCACUUA----GCCA--CUUGCC ....((((((((.......)))))...(((((((((...(((.((....)).))).))..))))))))))......((((.........)))).....----....--...... ( -27.60) >DroEre_CAF1 8786 96 + 1 UACACCUGUCGCUACAACUGUGGUAAAGCCUUCCGUUUUUGCAGCGCCCGCAGCAUGCACGAAAGGUAAAAUU---------------UCCUCCCUCAGAACU-CCACCA--CC .....(((..(((((....)))))...(((((.(((...(((.((....)).)))...))).)))))......---------------........)))....-......--.. ( -20.50) >DroYak_CAF1 8665 94 + 1 UACUCCUGUCGCUACAACUGUGGAAAAGCCUUCCGCUUCUGCAGUGCCCGCAGCAUGCACGAAAGGUAAAACA------------CCAUCGUCCCUU-----G-CCACCA--CA ..........((....((((..((..(((.....)))))..))))....)).(((.(.((((..(((.....)------------)).)))).)..)-----)-).....--.. ( -21.00) >consensus UACAUCUGUCGCUACAACUGUGGCAAAACCUUUCGCUUUUGCAGCGCCCGCAGCAUGCAUGAAAGGUAGAAUUUCAGACGAAUC_CCACCGUCACUUA____GCCCACCA__CC ......((((((.......))))))..((((((((....(((.((....)).)))....))))))))............................................... (-19.66 = -19.26 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:34 2006