| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,064,890 – 7,065,010 |
| Length | 120 |
| Max. P | 0.682249 |
| Location | 7,064,890 – 7,065,010 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.83 |
| Mean single sequence MFE | -46.04 |
| Consensus MFE | -34.84 |
| Energy contribution | -35.56 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7064890 120 + 27905053 AACAGCGGUGUCUCAGGCCGCCGGCGUCCCAGCAUGUGUGCCACAUAUGUGGCAAGCAUCUGACCACGGCCUUUAAUCUGAAGAAUCACCUGGUUCGCCACGCGGGCACACGACGCCACA ....(.((((((.((((..((((..(((..((.((((.((((((....)))))).)))))))))..))))((((.....)))).....))))((((((...))))))....)))))).). ( -47.90) >DroSec_CAF1 8105 120 + 1 AGGAGCGAUGUCUCAGGCCGGCGCCGUCCCAGCAUGUGUGCCACAUUUGUGGCAAGCAUCUGACCACGGCCUUCAAUCUGAAGAAUCACCUGGUUCGCCACGCGGGCACACGACGCCACA .(..(((.(((.....(((.(((((((..(((.((((.((((((....)))))).)))))))...)))))((((.....)))).......(((....))).)).)))..))).)))..). ( -46.70) >DroSim_CAF1 8325 120 + 1 AGGAGCGAUGUCUCAGGCCGGCGCCGUCCCAGCAUGUGUGCCACAUUUGUGGCAAGCAUCUGACCACGGCCUUCAAUCUGAAGAAUCACCUGGUUCGCCACGCGGGCACACGACGCCACA .(..(((.(((.....(((.(((((((..(((.((((.((((((....)))))).)))))))...)))))((((.....)))).......(((....))).)).)))..))).)))..). ( -46.70) >DroEre_CAF1 8586 120 + 1 AGGAGCGUUGUCCAAGGCCGGCGGCUGCCCAGCAUGUGUGCGACAUAUGUGGCAAGCGGCUGACCACGGCCUUCAAUCUGAAGAAUCACCUGGUACGCCACGCAGGAACACGACCGCACA ....(((((((..(((((((.((((((((((.((((((.....)))))))))...)))))))....)))))))...............((((((.....)).))))...)))).)))... ( -44.40) >DroYak_CAF1 8465 120 + 1 AGGAGCGAUGUCCAAGGCCGGCGGCAUCCCAGCAUGUGUGCCACAUAUGUGGCAAGCGGCUGACAACGGCCUUUAAUCUGAAGAAUCACCUGGUUCGCCACGCAGGCAAACGACCGCACA ....(((..(((.(((((((..((...))((((.(((.((((((....)))))).)))))))....))))))).........(((((....)))))(((.....)))....))))))... ( -44.50) >consensus AGGAGCGAUGUCUCAGGCCGGCGGCGUCCCAGCAUGUGUGCCACAUAUGUGGCAAGCAUCUGACCACGGCCUUCAAUCUGAAGAAUCACCUGGUUCGCCACGCGGGCACACGACGCCACA ....(.(..(((....(((.(((......(((.((((.((((((....)))))).))))))).....(((.(((.....)))(((((....)))))))).))).)))....)))..).). (-34.84 = -35.56 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:33 2006