Locus 2611

Sequence ID 3R_DroMel_CAF1
Location 7,058,603 – 7,058,702
Length 99
Max. P 0.506104
window4252

overview

Window 2

Location 7,058,603 – 7,058,702
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 81.49
Mean single sequence MFE -18.74
Consensus MFE -12.27
Energy contribution -12.67
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.65
SVM decision value -0.05
SVM RNA-class probability 0.506104
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7058603 99 - 27905053
AGCACGCUCUCUAAAAGAAAA-AGGAAAAGAUCGGUGGCAGAGAUGAUUCAGUAUGCGAUGCAGUGGACAGAAACACUGCAUGGCGAACCAUAACAAUAU
.((.((((.(((.........-......)))..))))))............((.(((.((((((((........)))))))).))).))........... ( -24.66)
>DroSec_CAF1 2097 94 - 1
AGCACGCUCUCUAAAAGAAAAAA-----AGAUCGGUGGCAGAGAUGAU-CAGUAUCCGAUGCAGUGGACAGACACACUGCAUGACGAACCAUAACAAUAU
....((.((..............-----..(((((..((.((.....)-).))..)))))((((((........))))))..)))).............. ( -19.00)
>DroSim_CAF1 2104 99 - 1
AGCACGCUCUCUAAAAGAAAAAAAGAAAAGAUCGGUGGCAGAGAUGAU-CAGUAUCCGAUGCAGUGGACAGACACACUGCAUGACGAACCAUAACAAUAU
....((.((.....................(((((..((.((.....)-).))..)))))((((((........))))))..)))).............. ( -19.00)
>DroEre_CAF1 2140 83 - 1
AGCACGCUCUCUAA----AAG-------AAAUCGGAUACAGAGAAAAUUCAAUAUCCAAUGCAGUG----G--ACACUGCAUGACGAAACAUAACAAUAU
....((.((.....----...-------.....(((((..(((....)))..))))).(((((((.----.--..))))))))))).............. ( -16.00)
>DroYak_CAF1 2091 91 - 1
AGCACGCUCUCUAAAAAAAAG-------AAAUCGGAUGCAGAAAAAAUUCAAUAUGCAAUGCAGUGCAUUG--ACACUGCACGACGAACCAUAACAAUAU
.....................-------...(((..((((..............)))).(((((((.....--.)))))))...)))............. ( -15.04)
>consensus
AGCACGCUCUCUAAAAGAAAA_A_____AGAUCGGUGGCAGAGAUGAUUCAGUAUCCGAUGCAGUGGACAGA_ACACUGCAUGACGAACCAUAACAAUAU
....((((((((...........................)))))..............((((((((........))))))))).)).............. (-12.27 = -12.67 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:29 2006