| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,055,732 – 7,055,852 |
| Length | 120 |
| Max. P | 0.590358 |
| Location | 7,055,732 – 7,055,852 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.72 |
| Mean single sequence MFE | -39.90 |
| Consensus MFE | -23.54 |
| Energy contribution | -24.18 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.590358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7055732 120 - 27905053 UCCCCCGGCCGAGGGUCAACUGCAGACCCAAAUUAUCACCCUGAUGAACUCGCUGGCCACUCUUUCCGCUGAGAAAUCCCGCAUGGAGGCCUCCUUUCAGGCGGAUAAAAAGCAACUGCG ......(((((.(((((.......)))))...(((((.....)))))......))))).........(((((....))((((.((((((....)))))).))))......)))....... ( -36.70) >DroVir_CAF1 3216 112 - 1 --------AAAGGGGUCAGCUGCAGACGCAGAUCAUAACGCUGAUGAACUCUCUAGCCACGCUGUCGGCGGAAAAGUCGCGCAUGGAGGCCUCUUUCCAGGCGGACAAGAAGCAGUUGCG --------......(.(((((((...(((.(((......((((..(....)..))))......))).))).....(((.(((.((((((....)))))).)))))).....)))))))). ( -35.20) >DroPse_CAF1 3199 120 - 1 UCCCUCGGCUGAGGGACAGCUGCAAACUCAGAUCAUCACGUUGAUGAACUCGCUGGCCACCCUGUCGGCGGAAAAGUCUCGAAUGGAAGCCUCCUUCCAGGCGGACAAGAAGCAGCUGCG ((((((....))))))(((((((....((((.(((((.....))))).))(((((((......)))))))))...(((.((..((((((....))))))..))))).....))))))).. ( -52.30) >DroWil_CAF1 4585 120 - 1 UUCAUCAUCUGAGAGUCAAUUGCAGACACAAAUUAUUACGCUGAUGAACUCAUUGGCCACUCUGUCGGCCGAGAAAUCCCGCAUGGAAGCUUCCUUUCAAGCAGACAAGAAGCAGUUGCG ((((.....)))).(.(((((((................((..(((....)))..))...((((((((..((....))))((.((((((....)))))).)).))).))).)))))))). ( -31.90) >DroAna_CAF1 3221 120 - 1 UCUGCCCGUCGAGGGACAGCUUCAGACCCAAAUAAUUACUUUGAUGAAUUCUCUGGCUACACUCUCUGCAGAAAAGUCCCGCAUGGAGGCCUCCUUCCAGGCCGACAAAAAGCAACUGCG .......((((.(((((((((..(((..((((.......))))......)))..))))....(((....)))...)))))((.((((((....)))))).)))))).....((....)). ( -30.10) >DroPer_CAF1 3202 120 - 1 UCCCUCGGCCGAGGGACAGCUGCAAACUCAGAUCAUCACGUUGAUGAACUCGCUGGCCACCCUGUCGGCGGAAAAGUCUCGAAUGGAAGCCUCCUUCCAGGCGGACAAGAAGCAGCUGCG ((((((....))))))(((((((....((((.(((((.....))))).))(((((((......)))))))))...(((.((..((((((....))))))..))))).....))))))).. ( -53.20) >consensus UCCCUCGGCCGAGGGACAGCUGCAGACCCAAAUCAUCACGCUGAUGAACUCGCUGGCCACCCUGUCGGCGGAAAAGUCCCGCAUGGAAGCCUCCUUCCAGGCGGACAAGAAGCAGCUGCG ..............(.(((((((.........(((((.....)))))........(((........)))......(((.(((.((((((....)))))).)))))).....)))))))). (-23.54 = -24.18 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:28 2006