Locus 261

Sequence ID 3R_DroMel_CAF1
Location 1,026,053 – 1,026,150
Length 97
Max. P 0.615123
window455

overview

Window 5

Location 1,026,053 – 1,026,150
Length 97
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 70.87
Mean single sequence MFE -27.10
Consensus MFE -11.44
Energy contribution -11.12
Covariance contribution -0.32
Combinations/Pair 1.24
Mean z-score -1.73
Structure conservation index 0.42
SVM decision value 0.17
SVM RNA-class probability 0.615123
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1026053 97 - 27905053
-ACUCACAACUCAGCCCAACCCUAAUUGCUUAUGAUGAUGACAUUGGCAGGGA-U---CCUUUUCGGGAGUCCCUGUUGCUU-GGCGUUGGUUUUGGGAUGCG
-.((((.(((.((((((((..............((((....))))((((((((-(---(((....)))).))))))))..))-)).))))))).))))..... ( -31.30)
>DroSec_CAF1 70923 77 - 1
-ACUCACAUCCCAGCCCAACCCUAAUCGCUUAUGAUGAUGACAUUGGCAGGGA-U---CCUUUUCGGGAGUCCCUGUUGCUU---------------------
-..(((((((..(((............)))...)))).)))....((((((((-(---(((....)))).))))))))....--------------------- ( -21.50)
>DroSim_CAF1 74680 77 - 1
-ACUCACAUCCCAGCCCAACCCUAAUCGCUUAUGAUGAUGACAUUGGCAGGGA-U---CCUUUUCGGGAGUCCCUGUUGCUU---------------------
-..(((((((..(((............)))...)))).)))....((((((((-(---(((....)))).))))))))....--------------------- ( -21.50)
>DroEre_CAF1 73687 98 - 1
-AAUACGAGUAUAUCCCAUCCCUAAUCGCUUAUGAUGAUGACAUUGGCAGGGGUU---CCUUUUCGGGAGUUCCUGUUGCUU-GGCGUUAGUUUUGGGAUGCA
-..........(((((((...((((.((((...((((....))))((((((..((---(((....)))))..))))))....-))))))))...))))))).. ( -34.60)
>DroAna_CAF1 71193 99 - 1
GAGUCGUCCCUCAUGUCAACUCGAACCGCUCGUAAUAAUGACAUUGGCAGCGG-UUUCCUUUUUUGGGUGUCCCUGUUGCUUUGGAGUUG---UUUGGAUGCG
..(.(((((.......((((((.......((((....))))((..((((((((-...(((.....))).....)))))))).))))))))---...)))))). ( -26.60)
>consensus
_ACUCACAUCCCAGCCCAACCCUAAUCGCUUAUGAUGAUGACAUUGGCAGGGA_U___CCUUUUCGGGAGUCCCUGUUGCUU_GG_GUU____UU_GGAUGC_
...........................((....((((....))))((((((((.....(((....)))..))))))))))....................... (-11.44 = -11.12 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:56 2006