| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,049,556 – 7,049,669 |
| Length | 113 |
| Max. P | 0.574839 |
| Location | 7,049,556 – 7,049,669 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.75 |
| Mean single sequence MFE | -32.87 |
| Consensus MFE | -25.25 |
| Energy contribution | -24.17 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574839 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7049556 113 + 27905053 ACUUUUUCUCU--AUUUGC-----CUGUAGAUCCGCUUGAUCAAGCAGCGCCAAAAGAAGGCCCAUGUCAUGGAGAUCCAGCUGAACGGCGGCUCCAUCGAGGACAAGGUCAAGUGGGCU ........(((--((....-----..)))))(((((((((((.....(.(((.......))).).((((((((((..((.(((....)))))))))))....)))).))))))))))).. ( -37.60) >DroVir_CAF1 3106 109 + 1 A-----UUUACU-CUUGUC-----GUACAGAUUCGUUUGAUCAAUCAGCGCCAGAAGAAGGCGCACAUCAUGGAGAUCCAGCUGAAUGGUGGCUCCAUUGAGGAUAAGGUUAAAUGGGUG .-----......-......-----......((((((((((((.(((.(((((.......)))))...((((((((..(((......)))...))))).))).)))..)))))))))))). ( -34.10) >DroGri_CAF1 3255 115 + 1 AAACCGUUUGUUUUUGGCA-----UUUUAGAUCCGUCUGAUCAAGCAACGCCAAAAGAAGGCGCAUAUCAUGGAGAUCCAGCUGAACGGUGGCUCCGUCGAGGAUAAGGUCAAAUGGGUG ...((((((.((((((((.-----((((.((((.....)))).)).)).))))))))..(((.(.((((((((((..(((.(.....).)))))))))....)))).))))))))))... ( -31.10) >DroWil_CAF1 3152 115 + 1 --CCUUAUUGA---UUUUCCCUUAUUCCAGAUCCGCUUGAUUAAGCAGCGCCAAAAGAAGGCCCACAUCAUGGAGAUCCAGCUGAACGGUGGCUCCAUUGAAGAUAAGGUCAAGUGGGUG --.........---................((((((((((((...(((((((.......)))........(((....)))))))..(((((....))))).......)))))))))))). ( -32.40) >DroMoj_CAF1 3110 110 + 1 A-----CUUAUUUUUUGAU-----UUUCAGAUCCGCCUGAUUAAGCAACGUCAAAAGAAGGCCCACAUCAUGGAGAUCCAGCUGAACGGUGGCUCCAUUGAGGAUAAGGUCAAGUGGGUG .-----....(((((((((-----..((((......)))).........)))))))))..((((((.((((((((..(((.(.....).)))))))).))).(((...)))..)))))). ( -29.80) >DroAna_CAF1 3641 110 + 1 --------CCU--GUUCGCCCUUUUUGUAGAUUCGUCUGAUCAAGCAGCGCCAAAAGAAGGCUCAUGUCAUGGAGAUCCAGCUGAACGGUGGCUCCAUCGAGGACAAGGUCAACUGGGCC --------...--....((((.....((.((((.((((.......(((((((.......)))........(((....)))))))..(((((....))))).))))..)))).)).)))). ( -32.20) >consensus A_____UUUAU__UUUGGC_____UUGCAGAUCCGCCUGAUCAAGCAGCGCCAAAAGAAGGCCCACAUCAUGGAGAUCCAGCUGAACGGUGGCUCCAUCGAGGAUAAGGUCAAGUGGGUG ..............................((((((.(((((.......(((.......)))...(.((((((((..((.(((....))))))))))).)).)....))))).)))))). (-25.25 = -24.17 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:23 2006