| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,043,722 – 7,043,829 |
| Length | 107 |
| Max. P | 0.745347 |
| Location | 7,043,722 – 7,043,829 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 72.34 |
| Mean single sequence MFE | -21.43 |
| Consensus MFE | -7.83 |
| Energy contribution | -8.88 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7043722 107 + 27905053 UACUUGUAGCGAAAGUUAACAUUGCAAACCUCGCACCUGUAAUGAUUAACAAGCACAAUUAUAU-------UAAUUAGGAAACUAAUGAUCUAAAAGCUCGAGAACACCCACCA ..((((.(((....((((((((((((...........))))))).)))))........(((.((-------((.((((....)))))))).)))..)))))))........... ( -22.90) >DroSec_CAF1 1390 104 + 1 UACUUGUAGCGAAAGUUCACAUUGCAGACCUCGCACCUGCAAAGAUAAACAAGCA--AUUUUA--------UAAUUAGGAAGCUAAUGAACUAAAAGCUCGAGUACACCCACCA ((((((.(((...(((((...((((((.........)))))).............--......--------..(((((....))))))))))....)))))))))......... ( -24.30) >DroSim_CAF1 1383 104 + 1 UACUUGUAGCGAAAGUUCACAUUGCAGACCUCGCACCUGCAAAGAUGAACAAGCA--AUUUUA--------UAAUUAGGAAGCUAAUGAACUAAAAGCUCGAGUACACCCACCA ((((((.(((....((((((.((((((.........)))))).).))))).....--.(((((--------..(((((....)))))....))))))))))))))......... ( -26.20) >DroEre_CAF1 1402 102 + 1 UACUUGUAGCGAAAGUGCACAUUGCACACCUCACACCUGCAAGGAUGAACAAGGA--AGUAAA--------UGAUUACUAAACCAGUUCAUGGAUAGCUCCAUA--ACCCACCA ..(((((((.((..((((.....))))...))....))))))).((((((..((.--(((((.--------...)))))...)).))))))(((....)))...--........ ( -22.60) >DroYak_CAF1 1405 102 + 1 UACUUGUAGCGAAAGUGCACAUUGCAGACUUCACACCUGCAUAGAUGAACAAGGA--AUUAUA--------UGAUUACUUAACCAGUUUAUGAAUAGCUUCAUA--ACUCACCA ..(((((.((....))...((((((((.........)))))...))).)))))..--......--------.............((((.(((((....))))))--)))..... ( -16.80) >DroAna_CAF1 1173 98 + 1 UACUUGUACCGGAAGUUUACAUUGCAGAUCUCACACCUGAAAAAAGGCAAUAGGACAAUUAAAUCGUUUUCAUAUUUCUAGGCUAAUGU--------------A--GCCUACCA ..........((..((((..(((((.....(((....)))......))))).))))......................(((((((...)--------------)--))))))). ( -15.80) >consensus UACUUGUAGCGAAAGUUCACAUUGCAGACCUCACACCUGCAAAGAUGAACAAGCA__AUUAUA________UAAUUACGAAACUAAUGAACUAAAAGCUCGAGA__ACCCACCA ..(((((.((....)).....((((((.........))))))......)))))............................................................. ( -7.83 = -8.88 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:19 2006