Locus 2603

Sequence ID 3R_DroMel_CAF1
Location 7,041,830 – 7,041,935
Length 105
Max. P 0.698265
window4237

overview

Window 7

Location 7,041,830 – 7,041,935
Length 105
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 83.66
Mean single sequence MFE -34.03
Consensus MFE -23.63
Energy contribution -23.55
Covariance contribution -0.08
Combinations/Pair 1.38
Mean z-score -2.45
Structure conservation index 0.69
SVM decision value 0.35
SVM RNA-class probability 0.698265
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7041830 105 - 27905053
UGUGAAAGUGGCCCGCAAAUGGAGGCAAAAUAUGAGUGAAGUGCCGCCCCAGGGCUGGGCCAUGAAAACAACACCCAGC--UCAAGUGGGAAAAUGUGAAAAUGCGG
(((....(((((((((...(((.((((..((....))....))))...)))..)).)))))))....)))...((((.(--....)))))................. ( -32.60)
>DroPse_CAF1 5714 105 - 1
UGUGAAAACGGCGGACAAUUGAAAGAAAAUCAUGAAUGAAGUGUUGCCCAAGUGCUGUGCCAUGAAAUU-CUGCCUACCAAUG-GGCUGGAAAACGUGAAAAAAUGA
.((....))((((((...((....))...(((((.....((..((.....))..))....)))))...)-)))))..(((...-...)))....(((......))). ( -20.30)
>DroSec_CAF1 5763 105 - 1
UGUGAAAGUGGCCCGCAAAUGGAGGCAAAACAUGAGUGAAGUGCCGCCACAGGGCUGGGCCAUGAAAACAACACCCAGC--GCAAGUGGGAAAAUGUGAAAAUGCGG
(((....(((((((((...(((.((((..((....))....)))).)))....)).)))))))....)))...((((.(--....)))))................. ( -38.10)
>DroSim_CAF1 5759 105 - 1
UGUGAAAGUGGCCCGCAAAUGGAGGCAAAACAUGAGUGAAGUGCCGCCCCAGGGCUGGGCCAUGAAAACAACACCCAGC--GCAAGUGGGAAAAUGUGAAAAUGCGG
(((....(((((((((...(((.((((..((....))....))))...)))..)).)))))))....)))...((((.(--....)))))................. ( -37.90)
>DroEre_CAF1 5845 105 - 1
UGUGAAAGUGGCCCGCUAAUGGAGGCAAAACUUGACUGAAGUGCCGCCCCAGGGCUGGGCCAAAAAAACACCACCCAUC--GCAAGGGGGAAAAUGUGAAAAUCCGG
(((.....(((((((((..(((.(((...((((.....))))...)))))).))).)))))).....)))...(((.((--....)))))................. ( -36.80)
>DroYak_CAF1 5750 105 - 1
UGUGAAAGUGGCCCGCAAAUGGAGGCAAACCAUGACUGAAGUGCCGCCUCAGGGCUGGGCCAUGAAAACACCACCCACC--GCAAGGGGGAAAUUGUGAAAAUCCGG
(((....(((((((((....((.((((...((....))...)))).)).....)).)))))))....)))...(((.((--....)))))................. ( -38.50)
>consensus
UGUGAAAGUGGCCCGCAAAUGGAGGCAAAACAUGAGUGAAGUGCCGCCCCAGGGCUGGGCCAUGAAAACAACACCCAGC__GCAAGUGGGAAAAUGUGAAAAUGCGG
(((....((((((((........((((...(......)...))))(((....)))))))))))....)))...(((.((......)))))................. (-23.63 = -23.55 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:15 2006