Locus 2602

Sequence ID 3R_DroMel_CAF1
Location 7,041,368 – 7,041,463
Length 95
Max. P 0.739096
window4236

overview

Window 6

Location 7,041,368 – 7,041,463
Length 95
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.83
Mean single sequence MFE -27.40
Consensus MFE -20.62
Energy contribution -21.07
Covariance contribution 0.45
Combinations/Pair 1.16
Mean z-score -1.36
Structure conservation index 0.75
SVM decision value 0.44
SVM RNA-class probability 0.739096
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7041368 95 - 27905053
AUCCGCGGCUCCCUGGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUCCU-UACGCUUCCUACCUUUUCGUUAG--CAUA--AAUCCUAA
....((((((....))))..((((((((.....)))).))))(((((((...(((.....-.))).......)))))))....)--)...--........ ( -28.20)
>DroGri_CAF1 5839 94 - 1
AUCCGUGGCUCUCUGGCCAAGCGUGCCCUGAUUGAGCUGCGCGAAAAGGGUAAAUAUUCCAAACUUUUAACAGAAUUUCA------AACAAUGUUUGUAA
.((((..((((((.((((....).)))..))..))))..)).))...(((.......)))..................((------(((...)))))... ( -20.10)
>DroSec_CAF1 5301 95 - 1
AUCCGCGGCUCCCUGGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUCCU-UACGCUUCCUAGCACUUCGUUAG--CACA--AAUCCUAA
.(((((((((....))))..(((.((((.....)))))))))).))(((((.(((.....-.)))....(((((.....)))))--....--.))))).. ( -28.30)
>DroSim_CAF1 5298 95 - 1
AUCCGCGGCUCCCUGGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUCCU-UACGCUUCCUAGCACUUCGUUAG--CACA--AAUCCUAA
.(((((((((....))))..(((.((((.....)))))))))).))(((((.(((.....-.)))....(((((.....)))))--....--.))))).. ( -28.30)
>DroEre_CAF1 5389 90 - 1
AUCCGCGGCUCCCUUGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUGCU-GGC-------UGCACUUCAUCACUUAACA--AAUCCUAA
....((((((.....((.(((((((((((..(((.......)))..))))))))))))).-)))-------)))................--........ ( -29.00)
>DroYak_CAF1 5293 88 - 1
AUCCGCGGCUCCCUGGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUGCU-GGC-------UGCACUUCACCAC--AACA--AAUCCUAA
....((((((....(((.(((((((((((..(((.......)))..))))))))))))))-)))-------)))..........--....--........ ( -30.50)
>consensus
AUCCGCGGCUCCCUGGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUCCU_UACGCUUCCUAGCACUUCAUUAG__AACA__AAUCCUAA
....(((((......)))(((((((((((..(((.......)))..)))))))))))...............)).......................... (-20.62 = -21.07 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:14 2006