Locus 2601

Sequence ID 3R_DroMel_CAF1
Location 7,034,067 – 7,034,169
Length 102
Max. P 0.842845
window4235

overview

Window 5

Location 7,034,067 – 7,034,169
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.88
Mean single sequence MFE -29.89
Consensus MFE -23.02
Energy contribution -22.47
Covariance contribution -0.55
Combinations/Pair 1.27
Mean z-score -2.31
Structure conservation index 0.77
SVM decision value 0.76
SVM RNA-class probability 0.842845
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7034067 102 + 27905053
UUUGAGCUACUGCCUCCGACGGAAAACGGAAAGGAAAGCGGCAGCGGAAGUGGGAGCGAUGGUGAAAAUGAAACGGAAGUGGAGGGCAGCAAGCAUGGAUCC
.....(((.((((((((..((.....)).........((....((....))....))...............((....))))).)))))..)))........ ( -26.00)
>DroSec_CAF1 33600 102 + 1
UUUGAGCUGCUGCCUCCGACGGAAAACGGAAAGGAAGGCGGCAGCGGAAGUGGGAGCGAUGGUGAAAAUGAAACGGAAGUGGAGGGCAGCAAGCAUGGAGCC
.....((((((((((((..((.....))....)).)))))))))).......((..(.(((.((........((....)).........))..))).)..)) ( -34.53)
>DroSim_CAF1 48312 102 + 1
UUCGAGCUGCUGCCUCCGACGGAAAACGGAAAGGAAGGCGGCAGCGGAAGUGGGAGCGAUGGUGAAAAUGAAACGGAAGUGGAGGGCAGCAAGCAUGGAGCC
(((..((((((((((((..((.....))....)).)))))))))).)))...((..(.(((.((........((....)).........))..))).)..)) ( -35.43)
>DroEre_CAF1 31802 102 + 1
UUUGAGUUGCUGCCUCCGACGGAAAACGGAAAGGAAAGCGGAAGCGGAAGUGGGAGCGAUGGUGAAAAUGAAAAAAACGUGGAGGGCAGCAAGCAUGGAUCC
..((..((((((((..(.(((................((....((....))....))..(.((....)).)......))).)..)))))))).))....... ( -28.80)
>DroYak_CAF1 33694 102 + 1
UUUGAGCUGUUGCCUCCGACGGAAAACGGAAAGGAAAGCGGAAGCGGAAGUGGGAGCGAUGCUGAAAACGAAACGGAAGUGGAGGGCAGCAAGCAUGGAUCC
.....(((.(..(.(((..((.....)).........((....))))).)..).)))..(((((....(...((....))...)..)))))........... ( -30.40)
>DroAna_CAF1 36525 90 + 1
UUCGAAUUGCUGCCAUCCGCAGAAAAUGGAGGGAAGAGCGACA------------GCGACGGCGAAAGGAUAUCAGAAACGGAAGGCAGCAAACAUGGAUCU
......((((((((.((((..................((....------------)).....(....)...........)))).)))))))).......... ( -24.20)
>consensus
UUUGAGCUGCUGCCUCCGACGGAAAACGGAAAGGAAAGCGGCAGCGGAAGUGGGAGCGAUGGUGAAAAUGAAACGGAAGUGGAGGGCAGCAAGCAUGGAUCC
((((.((((((((((((..((.....)).........((....((....))....)).......................))).)))))).))).))))... (-23.02 = -22.47 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:13 2006