Locus 2600

Sequence ID 3R_DroMel_CAF1
Location 7,033,051 – 7,033,143
Length 92
Max. P 0.744430
window4234

overview

Window 4

Location 7,033,051 – 7,033,143
Length 92
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 76.57
Mean single sequence MFE -26.43
Consensus MFE -18.84
Energy contribution -18.98
Covariance contribution 0.14
Combinations/Pair 1.27
Mean z-score -1.15
Structure conservation index 0.71
SVM decision value 0.46
SVM RNA-class probability 0.744430
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7033051 92 + 27905053
UUUAACUUGAUUUCUUCAUCUGAAA--CCCAGCUCUCGGGCAGCACAACGAUGGAUUUGUGCGCUGUCCCGAGGAGGCUCUCACCUGGGAGCAC
.....((.(.((((.......))))--.).))((((((((((((.((.(((.....))))).)))).))))).)))((((((....)))))).. ( -32.50)
>DroGri_CAF1 40295 85 + 1
---------AUAUUCUCUUCUGUCUCUUGUAGCUCUCGGCCAGCACAACGAUGGCUUUGUGCGUUGCCCCGACGAGGCUUUGACUUGGGAGCAU
---------.....(((((..(((......(((.((((((..((((((........))))))...))).....))))))..)))..)))))... ( -24.00)
>DroSec_CAF1 32586 92 + 1
UUUAACUCGAUUUCUUCAUCUGAAA--CCCAGCUCUCGGUCAGCACAACGAUGGAUUUGUGCGCUGUCCUGAGGAGGCUCUCACCUGGGAGCAC
.....(((..((((.......))))--.......(((((.((((.((.(((.....))))).)))).)).))))))((((((....)))))).. ( -28.60)
>DroEre_CAF1 30790 92 + 1
UUCAACCCGGUUUCUCCAUCGGAAA--UCCAGCUCUCGGCCAGCACAACGAUGGAUUUGUGCGCUGCCCCGACGAGGCUCUCACCUGGGACCAC
.....((((((((((.....)))))--)).(((((((((.((((.((.(((.....))))).))))..)))).)).))).......)))..... ( -26.80)
>DroWil_CAF1 58198 86 + 1
UUUUAUUUGGUUUUUC-UUU-------UCUAGCUCUUGGCCAGCAUAAUGAUGGCUUUGUACGUUGUCCCGAGGAAGCCUUAACCUGGCAACAU
................-...-------...........(((((.....(((.((((((.(.((......))).)))))))))..)))))..... ( -16.80)
>DroYak_CAF1 32686 89 + 1
---AACUCGAUUUCUUCAUUUGAAA--CCUAGCUCUCGGCCAGCACAACGAUGGCUUUGUGCGCUGUCCCGAGGAGGCUCUCACCUGGGAGCAC
---..((((.((((.......))))--.).....(((((.((((.((.(((.....))))).))))..))))))))((((((....)))))).. ( -29.90)
>consensus
UUUAACUCGAUUUCUUCAUCUGAAA__CCCAGCUCUCGGCCAGCACAACGAUGGAUUUGUGCGCUGUCCCGAGGAGGCUCUCACCUGGGAGCAC
................................(((((((.((((.((.(((.....))))).))))..)))).)))((((((....)))))).. (-18.84 = -18.98 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:12 2006