| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,025,075 – 7,025,177 |
| Length | 102 |
| Max. P | 0.745398 |
| Location | 7,025,075 – 7,025,177 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 82.84 |
| Mean single sequence MFE | -36.25 |
| Consensus MFE | -20.97 |
| Energy contribution | -23.72 |
| Covariance contribution | 2.75 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7025075 102 - 27905053 UCAUUUAGUUUGGGGCGGUUGCUUUUGCGUAGUUCUC---GCAAAUCCUACGCUCCCAGUUGGCCUGUCAAGGUCACUGGUGAGU-GUGAGUCCGUUCGCUGAUUA ....(((((...((((((..(((((((((.......)---)))))...((((((((((((.(((((....)))))))))).))))-)))))))))))))))))... ( -40.70) >DroSec_CAF1 24015 102 - 1 UCAUUUAGUUUGGGGCGGUUGGUUUUGCGUAGUUAUC---GCAAAUCCUAAGCUCCCAGUUGGCCUGUCAAGGUCACUGGUGAGU-GUGAGUCCGUUCGCUGAUUA ....(((((...((((((..((.((((((.......)---))))).))...(((((((((.(((((....)))))))))).))))-......)))))))))))... ( -38.80) >DroSim_CAF1 38324 102 - 1 UCAUUUAGUUUGGGGCGGUUGGUUUUGCGUAGUUCUC---GCAAAUCCUAAGCUCCCAGUUGGCCUGUCAAGGUCACUGGUGAGU-GUGAGUCCGUUCGCUGAUUA ....(((((...((((((..((.((((((.......)---))))).))...(((((((((.(((((....)))))))))).))))-......)))))))))))... ( -38.80) >DroEre_CAF1 22990 102 - 1 UUAAUUAGUUUGGAGCGGUUGGUUUUGCGUAGUUCUC---GCAAAUCCUAUACUCCCAGUUGGCCUGUCAAGGUCACUGAUGAGU-GUGAGUCCGUUGGCUGAUUA .(((((((((...(((((..((.((((((.......)---))))).))(((((((.((((.(((((....)))))))))..))))-)))...)))))))))))))) ( -38.10) >DroYak_CAF1 24615 102 - 1 UUAAUUAGUUUGGGGCGGUUGGUUUUGCGUAGUUCUC---GCAAAUCCUAUACUCCCAGUUGGCCUGUCAAGGUCACUGGUGAGU-GUGAGUCCGUUUGCUGAUUA .((((((((...((((....((.((((((.......)---))))).))((((((((((((.(((((....)))))))))).))))-))).))))....)))))))) ( -43.80) >DroPer_CAF1 29085 88 - 1 UUAAUUAGUUUGAAGCGGUUGCAUUUGCGUUGUUCUAUGAGCGAAUCCAGA-----------GAUUGUCAAGGUUACUGCUGUUCGGUGGGGCAGUUGG------- ........(((((.....(((.((((((............)))))).))).-----------.....)))))....(.(((((((....))))))).).------- ( -17.30) >consensus UCAAUUAGUUUGGGGCGGUUGGUUUUGCGUAGUUCUC___GCAAAUCCUAAGCUCCCAGUUGGCCUGUCAAGGUCACUGGUGAGU_GUGAGUCCGUUCGCUGAUUA ....(((((...((((((..((.(((((............))))).))...(((((((((.(((((....)))))))))).)))).......)))))))))))... (-20.97 = -23.72 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:09 2006