Locus 2597

Sequence ID 3R_DroMel_CAF1
Location 7,024,387 – 7,024,487
Length 100
Max. P 0.681751
window4229

overview

Window 9

Location 7,024,387 – 7,024,487
Length 100
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 80.38
Mean single sequence MFE -22.88
Consensus MFE -12.54
Energy contribution -13.54
Covariance contribution 1.00
Combinations/Pair 1.16
Mean z-score -2.00
Structure conservation index 0.55
SVM decision value 0.31
SVM RNA-class probability 0.681751
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7024387 100 - 27905053
AGAUCAAAUGGCAGAUAAUACCUCUUGUUUGAACAUUAAAGCUGAUUGGUUAAUAAAUGAGUUUAUUGAUCGAUUGAAAUAA----------------UGUUAACUUACAAAUAAG
.......................(((((((((((((((...(.((((((((((((((....)))))))))))))))...)))----------------))))......)))))))) ( -19.40)
>DroSec_CAF1 23343 99 - 1
AGAUUAAUUGGU-GAUAAUACCUCUUGUUUGCACAUUAAAGCUGAUUGGUUUAUAAAUGAGUUUACUGAUCGAUUGAAAUAA----------------UGUUACCUUACAAACAAU
.........(((-((((.((..((..((((........))))((((..((..((......))..))..))))...))..)).----------------)))))))........... ( -15.00)
>DroSim_CAF1 37621 99 - 1
AGAUUAAUUGGU-GAUAAUACCUCUUGUUUGCACAUUAAAGCUGAUUGGUUAAUAAAUGAGUUUAUUGAUCGAUUGAAAUAA----------------UGUUAACUUACAAACAAU
.........(((-(....))))..(((((((.((((((...(.((((((((((((((....)))))))))))))))...)))----------------))).......))))))). ( -19.20)
>DroEre_CAF1 22258 116 - 1
AGAUUAAUUGGUAGAUAAUAGCUAUUGGUUACACAUUAAUGUUGAUGGAUUAAUAAAUGAGUAUAUUGAUCUAUUGAAUUGAAGUAAGGGCACAGCUAUGUUCACUUACAAAGAAU
....((((..((((.......))))..))))....(((((.(..(((((((((((........)))))))))))..)))))).(((((((.(((....))))).)))))....... ( -26.50)
>DroYak_CAF1 23880 116 - 1
AGAUUAAUUGGUAGAUAAUAGCUGUUGUUUGCACAUUAAUGCUGAUUGGUUAAUAAAUGAGUAUAUUGAUCGAUUGCAUUAAUGAAAGGGCACAGCUAUCUUAACUUACAAGCAAU
.......(((..((.((((((((((.((((...(((((((((.((((((((((((........)))))))))))))))))))))...))))))))))))..)).))..)))..... ( -34.30)
>consensus
AGAUUAAUUGGUAGAUAAUACCUCUUGUUUGCACAUUAAAGCUGAUUGGUUAAUAAAUGAGUUUAUUGAUCGAUUGAAAUAA________________UGUUAACUUACAAACAAU
.......(((((((((((......))))))))...........((((((((((((((....)))))))))))))).................................)))..... (-12.54 = -13.54 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:07 2006