| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,021,034 – 7,021,125 |
| Length | 91 |
| Max. P | 0.683338 |
| Location | 7,021,034 – 7,021,125 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 76.53 |
| Mean single sequence MFE | -21.15 |
| Consensus MFE | -12.19 |
| Energy contribution | -13.25 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7021034 91 - 27905053 AUUAGGAGGCGCCAUACCCCAAUUUAAGCCUCCCCCCCUGCUACGCCCAUUUUAUCCAUGGAACUCUUGGCU--AGACCUUGGGUAUCUGUAU ....((((((.................)))))).....(((...(((((.((((.(((.((....))))).)--)))...)))))....))). ( -22.33) >DroSec_CAF1 20034 76 - 1 AUUAGGAGGCGCCA---------------CCCCCACCCUGCUACGCCCAUUUUAUCCAUGGUAUCCAUGGCC--UGACCAUGGGUAUCUGUAU ....(((((((...---------------..............)))).......)))..(((((((((((..--...)))))))))))..... ( -21.34) >DroSim_CAF1 34335 76 - 1 AUUAGGAGGCGCCA---------------CCCCCACCCUGCUACGCCCAUUUUAUCCAUGGUAUCCAUGGCC--UGACCAUGGGUAUCUGUAU ....(((((((...---------------..............)))).......)))..(((((((((((..--...)))))))))))..... ( -21.34) >DroYak_CAF1 20657 78 - 1 UUUAUGAGUAGCCC---------------CCUCCCCUUUGCUACGCCCAUCACAUCCAUUGGAUCCAUGGCCAUGGACCAUGGGUAUCUGUAU .......(((((..---------------..........)))))((((((....(((((.((........)))))))..))))))........ ( -19.60) >consensus AUUAGGAGGCGCCA_______________CCCCCACCCUGCUACGCCCAUUUUAUCCAUGGUAUCCAUGGCC__UGACCAUGGGUAUCUGUAU ..(((((((((................................))))..))))).....((((((((((((....).)))))))))))..... (-12.19 = -13.25 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:05 2006