| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,010,237 – 7,010,332 |
| Length | 95 |
| Max. P | 0.912001 |
| Location | 7,010,237 – 7,010,332 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 97.48 |
| Mean single sequence MFE | -22.86 |
| Consensus MFE | -21.26 |
| Energy contribution | -21.66 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7010237 95 + 27905053 -UUGAGUCGCGGCAUCACUUCAGCUAUUCAUGGACACUCGGGCACUCACCCUUUGAUGCCGCAUAAUUACUCGAUAAUGUGCAUUCAAAUCGUAAA -((((((.(((((((((.((((........)))).....(((......)))..))))))))).....(((........))).))))))........ ( -24.90) >DroSec_CAF1 9232 95 + 1 -UUGAGUCGAGGCAUCUCUUCAGCUAUUCAUGGACACUCGGGCACUCACCCUUUGAUGCCGCAUAAUUACUCGAUAAUGUGCAUUCAAAUCGUAAA -((((((...((((((..((((........)))).....(((......)))...))))))(((((.(((.....))))))))))))))........ ( -22.00) >DroSim_CAF1 22953 95 + 1 -UUGAGUCGCGGCAUCUCUUCAGCUAUUCAUGGACACUCGGGCACUCACCCUUUGAUGCCGCAUAAUUACUCGAUAAUGUGCAUUCAAAUCGUAAA -((((((.((((((((..((((........)))).....(((......)))...)))))))).....(((........))).))))))........ ( -23.80) >DroEre_CAF1 9273 96 + 1 UUUGAGUCGCAGCAUCUCUUCAGCUAUUCAUGGAUACUCGGGCACUCACCCUUUGAUGCCGCAUAAUUACUCGAUAAUGUGCAUUCAAAUCGUAAA (((((((.((.(((((..((((........)))).....(((......)))...))))).((((.(((....))).)))))))))))))....... ( -19.80) >DroYak_CAF1 9387 95 + 1 -UUGAGUCGCGGCAUCUCUUCAGCUAUUCAUGGACACUCGGGCACUCACCCUUUGAUGCCGCAUAAUUACUCGAUAAUGUGCAUUCAAGUCGUAAA -((((((.((((((((..((((........)))).....(((......)))...)))))))).....(((........))).))))))........ ( -23.80) >consensus _UUGAGUCGCGGCAUCUCUUCAGCUAUUCAUGGACACUCGGGCACUCACCCUUUGAUGCCGCAUAAUUACUCGAUAAUGUGCAUUCAAAUCGUAAA .((((((.((((((((..((((........)))).....(((......)))...)))))))).....(((........))).))))))........ (-21.26 = -21.66 + 0.40)
| Location | 7,010,237 – 7,010,332 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 97.48 |
| Mean single sequence MFE | -26.16 |
| Consensus MFE | -24.48 |
| Energy contribution | -24.52 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7010237 95 - 27905053 UUUACGAUUUGAAUGCACAUUAUCGAGUAAUUAUGCGGCAUCAAAGGGUGAGUGCCCGAGUGUCCAUGAAUAGCUGAAGUGAUGCCGCGACUCAA- .....(((.((......))..)))((((.....((((((((((..((((....)))).(((.((...))...)))....))))))))))))))..- ( -27.90) >DroSec_CAF1 9232 95 - 1 UUUACGAUUUGAAUGCACAUUAUCGAGUAAUUAUGCGGCAUCAAAGGGUGAGUGCCCGAGUGUCCAUGAAUAGCUGAAGAGAUGCCUCGACUCAA- .....((.((((..(((..((.((.(((..(((((.(((((....((((....))))..))))))))))...))))).))..))).)))).))..- ( -24.30) >DroSim_CAF1 22953 95 - 1 UUUACGAUUUGAAUGCACAUUAUCGAGUAAUUAUGCGGCAUCAAAGGGUGAGUGCCCGAGUGUCCAUGAAUAGCUGAAGAGAUGCCGCGACUCAA- .....(((.((......))..)))((((.....(((((((((...((((....)))).(((.((...))...))).....)))))))))))))..- ( -27.20) >DroEre_CAF1 9273 96 - 1 UUUACGAUUUGAAUGCACAUUAUCGAGUAAUUAUGCGGCAUCAAAGGGUGAGUGCCCGAGUAUCCAUGAAUAGCUGAAGAGAUGCUGCGACUCAAA .....(((.((......))..)))((((.....(((((((((...((((....)))).(((...........))).....)))))))))))))... ( -24.10) >DroYak_CAF1 9387 95 - 1 UUUACGACUUGAAUGCACAUUAUCGAGUAAUUAUGCGGCAUCAAAGGGUGAGUGCCCGAGUGUCCAUGAAUAGCUGAAGAGAUGCCGCGACUCAA- ......((((((..........)))))).....(((((((((...((((....)))).(((.((...))...))).....)))))))))......- ( -27.30) >consensus UUUACGAUUUGAAUGCACAUUAUCGAGUAAUUAUGCGGCAUCAAAGGGUGAGUGCCCGAGUGUCCAUGAAUAGCUGAAGAGAUGCCGCGACUCAA_ ........................((((.....(((((((((...((((....)))).(((.((...))...))).....)))))))))))))... (-24.48 = -24.52 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:05 2006