Locus 2593

Sequence ID 3R_DroMel_CAF1
Location 7,009,773 – 7,009,875
Length 102
Max. P 0.613601
window4224

overview

Window 4

Location 7,009,773 – 7,009,875
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 88.73
Mean single sequence MFE -20.38
Consensus MFE -18.61
Energy contribution -18.30
Covariance contribution -0.31
Combinations/Pair 1.14
Mean z-score -1.36
Structure conservation index 0.91
SVM decision value 0.16
SVM RNA-class probability 0.613601
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7009773 102 + 27905053
AUUCGGGUUCCUUCAGUGUUUGUUUUAUUUUUCCUGAGCGUUUUUAUUGUUGUCAUGUUGCUUUGGCCGUAAUGGCAGCUCGUAAAAAUGUUUCAUUUAUGC
..(((((.........................)))))((((((((((.((((((((...((....))....))))))))..))))))))))........... ( -22.41)
>DroSec_CAF1 8774 102 + 1
AUUCGGUUUCCUCCAGCGCUUCUUUUAUUUUUCCUGAGCGUUUUUAUUGUUGUCAUGUUGCUUUGGCCGUAAUGGCAGCUCGUAAAAAUGUUUCAUUUAUGC
....((......)).....................((((((((((((.((((((((...((....))....))))))))..))))))))))))......... ( -21.90)
>DroSim_CAF1 22496 102 + 1
AUUCGGUUUUCUCCAGCGUUUGUUUUAUUUUUCCUGAGCGUUUUUAUUGUUGUCAUGUUGCUUUGGCCGUAAUGGCAGCUCGUAAAAAUGUUUCAUUUAUGC
....((......)).((((.((.............((((((((((((.((((((((...((....))....))))))))..))))))))))))))...)))) ( -22.21)
>DroAna_CAF1 8513 96 + 1
CAUUGUCCUUUUUCAG-GCUU-AUUUAUUUUU----GGUGUUUUUAUUGUUGUCAUGUUGCUUUGGUCGUAAUGGCAGCUCGUAAAAAUGUUUCAUUUAUGC
....(.(((.....))-))..-..........----((..(((((((.((((((((...((....))....))))))))..)))))))..)).......... ( -15.00)
>consensus
AUUCGGUUUCCUCCAGCGCUUGUUUUAUUUUUCCUGAGCGUUUUUAUUGUUGUCAUGUUGCUUUGGCCGUAAUGGCAGCUCGUAAAAAUGUUUCAUUUAUGC
...................................((((((((((((.((((((((...((....))....))))))))..))))))))))))......... (-18.61 = -18.30 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:03 2006