| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,003,820 – 7,003,910 |
| Length | 90 |
| Max. P | 0.774619 |
| Location | 7,003,820 – 7,003,910 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.31 |
| Mean single sequence MFE | -20.64 |
| Consensus MFE | -16.80 |
| Energy contribution | -16.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7003820 90 - 27905053 --------------UUUUA-UUUGCGAAAAAGAGUUGAA-AACAUGCUGGGCACGUGCUGAUUGAUGUAAAGUGCGUAAUGAGCGCGGUUAUGUUUAUGGGCAAGA------------ --------------.....-.............(((.((-((((((....((.((((((.(((.((((.....))))))).))))))))))))))).).)))....------------ ( -19.90) >DroPse_CAF1 3190 101 - 1 --------------AAAUA-UUGCUGAAAAAGAGUUGAA-AACAUGCUGGGCACGUGCUGAUUGAUGUAAAAUGCGUAAUGAGCGCGGUUAGGUUUAUGGGCCAAA-GGAAGGGAAAA --------------.....-...................-..((((((..((.((((((.(((.((((.....))))))).))))))))..)))..)))..((...-....))..... ( -19.40) >DroGri_CAF1 4308 104 - 1 AAAAUACAAAACCAAAAAA-UGGUUGCGAAAGAGUUUAA-AACAUGCUGGGCACGUGCUGAUUGAUGUAAAAUGCGUAAUGAGCGCGGUUAUACUUAUGGCCAGGA------------ .........(((((.....-))))).(....).......-......((((.((((((((.(((.((((.....))))))).))))))(.....)...)).))))..------------ ( -24.70) >DroWil_CAF1 24634 93 - 1 --------------A--AAUUUGUUGAAAAAGAGUUGAAAAACAUGCUGGGCACGUGCUGAUUGAUGUAAAAUGCGUAAUGAGCGCGGUUAUGUUUAUGGCCUGAGAGG--------- --------------.--................(((....)))...((((((.((((((.(((.((((.....))))))).))))))............)))).))...--------- ( -20.02) >DroYak_CAF1 3025 90 - 1 --------------UUUUA-UUUGUAAAAAAGAGUUGAA-AACAUGCUGGGCACGUGCUGAUUGAUGUAAAAUGCGUAAUGAGCGCGGUUAUGUUUAUGGGCAAAA------------ --------------.....-.............(((.((-((((((....((.((((((.(((.((((.....))))))).))))))))))))))).).)))....------------ ( -19.90) >DroAna_CAF1 2651 85 - 1 --------------UUUUA-UU-----AAAAGAGUUGAA-AACAUGCUGGGCACGUGCUGAUUGAUGUAAAAUGCGUAAUGAGCGCGGUUAUGUUUAUGGCCAAAA------------ --------------.....-..-----....(.((((.(-((((((....((.((((((.(((.((((.....))))))).))))))))))))))).)))))....------------ ( -19.90) >consensus ______________AUUUA_UUGGUGAAAAAGAGUUGAA_AACAUGCUGGGCACGUGCUGAUUGAUGUAAAAUGCGUAAUGAGCGCGGUUAUGUUUAUGGCCAAAA____________ ..........................................((((...(((.((((((.(((.((((.....))))))).))))))))).....))))................... (-16.80 = -16.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:59 2006