| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,010,439 – 1,010,533 |
| Length | 94 |
| Max. P | 0.714824 |
| Location | 1,010,439 – 1,010,533 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 86.15 |
| Mean single sequence MFE | -10.42 |
| Consensus MFE | -8.29 |
| Energy contribution | -8.34 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1010439 94 - 27905053 GUUUUUAUUGUUUGUGUAAAACAUUAAUCUCAUGCACUCACCAAACCGA-AAAAAUUACC--CUACAAAUAUGCAAA-ACAAUUUGCACAAACCCACA .........(((((((((((.(((.......)))...((........))-..........--...............-....)))))))))))..... ( -9.50) >DroSec_CAF1 55352 94 - 1 GUUUUUAUUGUUUGUGUAAAACAUUAAUAUCAUGCACUCGCCAAACCGA-AAAAAUUACC--CAACAAAUAUGCAAA-ACAAUUUGCACAAACCCACA .........(((((((((((.(((.......)))...(((......)))-..........--...............-....)))))))))))..... ( -11.30) >DroEre_CAF1 58205 94 - 1 GUGUUUAUUGUUUGUGUAAAACAUUAAUCUCAUGCACUCACCAAACCGA-ACAAAUUACC--CAACAAAUAUGCAAA-ACAAUUUGCACAAACCCACA ((((..((((((((((((..............)))))((........))-..........--.............))-)))))..))))......... ( -12.54) >DroYak_CAF1 59542 94 - 1 GUUUUUAUUGUUUGUGUAAUACAUUAAUCUCAUGCACUCACCAAACCGA-AAAAAUUACC--CAACAAAUAUGCAAA-AAAAAUUGCACAAACCCACA .........(((((((((((.(((.......)))...((........))-..........--...............-....)))))))))))..... ( -9.60) >DroAna_CAF1 54799 94 - 1 GUUUUUAUUGUUUGUGUAAAACAUUAAUCUCAUGCACUCACCAAACCGACAAAAAUUACA--CAA-AAAUAUGCAAA-ACAAUUUGCACAACCACGCA ((((((((..(((((((((..(((.......)))...((........))......)))))--)))-)...))).)))-))....(((........))) ( -10.70) >DroPer_CAF1 67724 86 - 1 ----------UUUGUGUAAAACAUUAAUCUCAUGCACAUGCCAUACAUA-CAAAAAAA-CAAAAACAAAUAUGCAAAAAUAAUUUGCACAAACACCCA ----------((((((((((.............((....))........-........-..........(((......))).))))))))))...... ( -8.90) >consensus GUUUUUAUUGUUUGUGUAAAACAUUAAUCUCAUGCACUCACCAAACCGA_AAAAAUUACC__CAACAAAUAUGCAAA_ACAAUUUGCACAAACCCACA .........(((((((((((............((((...................................)))).......)))))))))))..... ( -8.29 = -8.34 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:51 2006