Locus 2589

Sequence ID 3R_DroMel_CAF1
Location 7,003,551 – 7,003,662
Length 111
Max. P 0.510806
window4219

overview

Window 9

Location 7,003,551 – 7,003,662
Length 111
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 83.71
Mean single sequence MFE -23.95
Consensus MFE -13.74
Energy contribution -14.55
Covariance contribution 0.81
Combinations/Pair 1.09
Mean z-score -2.05
Structure conservation index 0.57
SVM decision value -0.04
SVM RNA-class probability 0.510806
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7003551 111 - 27905053
AUUUUAAUCUUUUAGGUGUAAAUUCAAGUUGAAAGACU-UGUUUGGCGCCGCCACGGUCAUUUAACUGACUGAUUAGAUAACUCGCUAUCAAUGCGAAAUAAACAUUUACAA
..(((((((.....(((((.....((((((....))))-))....))))).....(((((......))))))))))))....((((.......))))............... ( -29.00)
>DroSec_CAF1 2623 111 - 1
AUUUUAAUCUUUUAAAUGUAAAUUCAAGGUGAAAAAUU-UGUUUGGCGCCGCUACGGUCAUUUAACUGACUGAUUAGAUAACUCGCUAUCAAUGCGAAAUAAGCAUUUACAA
................(((((((....((((..(((..-..)))..))))(((.((((((......))))))..........((((.......))))....)))))))))). ( -25.40)
>DroSim_CAF1 16507 109 - 1
AUUUUAAUCUUUUAUUUGUAAAAUCAAGGUGAAAAAUU---UUUGGCGCCGCCACGGUCAUUUAACUGACUGAUUAGAUAACUCGCUAUCAAUGCGAAAUAAGCAUUUACAA
...............(((((((.....((((..((...---.))..))))((..((((((......))))))..........((((.......)))).....)).))))))) ( -22.20)
>DroYak_CAF1 2747 97 - 1
ACUUUAAUCUUUUAAGUGUAAAUUCAAGUUGAAGGAUAUUCUUUGGCGCCUACACGGUCAUUUAACAGACUGAUUAGAUAAACCGCUAUCAAUGC---------------AA
..(((((((......(((((.......((..((((....))))..))...)))))((((........)))))))))))......((.......))---------------.. ( -19.20)
>consensus
AUUUUAAUCUUUUAAGUGUAAAUUCAAGGUGAAAAAUU_UGUUUGGCGCCGCCACGGUCAUUUAACUGACUGAUUAGAUAACUCGCUAUCAAUGCGAAAUAAGCAUUUACAA
..(((((((..................((((..(((.....)))..)))).....(((((......))))))))))))....((((.......))))............... (-13.74 = -14.55 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:58 2006